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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.253 C 0.247 G 0.247 T 0.253 

MOTIF 1-AGTGGTTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 3.0e-001
 0.946500 0.001720 0.001720 0.050061
 0.244183 0.050016 0.558992 0.146809
 0.098512 0.001720 0.001720 0.898048
 0.001764 0.001720 0.994752 0.001764
 0.001764 0.001720 0.994752 0.001764
 0.195886 0.001720 0.001720 0.800674
 0.001764 0.001720 0.050016 0.946500
 0.898048 0.001720 0.098468 0.001764

MOTIF 2-TAGCKCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001845 0.001799 0.001799 0.994557
 0.994557 0.001799 0.001799 0.001845
 0.001845 0.102836 0.893473 0.001845
 0.001845 0.943992 0.052317 0.001845
 0.001845 0.001799 0.659354 0.337002
 0.102883 0.893473 0.001799 0.001845
 0.842839 0.102998 0.001799 0.052364
 0.001845 0.001799 0.741429 0.254927

MOTIF 3-ATYGAACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.943755 0.001808 0.052583 0.001855
 0.001855 0.001808 0.001808 0.994530
 0.001855 0.614572 0.022827 0.360746
 0.001855 0.052583 0.943708 0.001855
 0.994530 0.001808 0.001808 0.001855
 0.994530 0.001808 0.001808 0.001855
 0.052629 0.943708 0.001808 0.001855
 0.001855 0.892933 0.052583 0.052629

MOTIF 4-GCTCTGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.023018 0.022436 0.931527 0.023018
 0.023018 0.931527 0.022436 0.023018
 0.023018 0.022436 0.022436 0.932109
 0.023018 0.931527 0.022436 0.023018
 0.023018 0.022436 0.022436 0.932109
 0.023018 0.022436 0.931527 0.023018
 0.023018 0.931527 0.022436 0.023018
 0.023018 0.931527 0.022436 0.023018

MOTIF 5-TGCAAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.023018 0.022436 0.022436 0.932109
 0.023018 0.022436 0.931527 0.023018
 0.023018 0.931527 0.022436 0.023018
 0.932109 0.022436 0.022436 0.023018
 0.932109 0.022436 0.022436 0.023018
 0.932109 0.022436 0.022436 0.023018
 0.932109 0.022436 0.022436 0.023018
 0.932109 0.022436 0.022436 0.023018

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/npax-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_npax-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.64 seconds
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