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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.264 C 0.236 G 0.236 T 0.264 

MOTIF 1-ATYGAACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.736920 0.259976 0.001467 0.001637
 0.001637 0.087544 0.001467 0.909351
 0.001637 0.477264 0.001467 0.519632
 0.001637 0.001467 0.995258 0.001637
 0.779820 0.217076 0.001467 0.001637
 0.995428 0.001467 0.001467 0.001637
 0.001637 0.995258 0.001467 0.001637
 0.216968 0.779927 0.001467 0.001637

MOTIF 2-GTTCGAAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 7.6e-001
 0.151853 0.003355 0.791837 0.052955
 0.102324 0.052566 0.101935 0.743175
 0.003744 0.003355 0.003355 0.989545
 0.052955 0.939945 0.003355 0.003744
 0.003744 0.003355 0.939945 0.052955
 0.989545 0.003355 0.003355 0.003744
 0.743175 0.101935 0.052566 0.102324
 0.052955 0.791837 0.003355 0.151853

MOTIF 3-GCTCTACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 9.1e-001
 0.057027 0.111924 0.828959 0.002090
 0.002090 0.993947 0.001873 0.002090
 0.002090 0.056810 0.056810 0.884290
 0.057027 0.939010 0.001873 0.002090
 0.057027 0.001873 0.001873 0.939227
 0.829176 0.001873 0.111924 0.057027
 0.112141 0.828959 0.001873 0.057027
 0.002090 0.993947 0.001873 0.002090

MOTIF 4-ACAGCCGM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.909079 0.084992 0.002802 0.003127
 0.003127 0.908754 0.084992 0.003127
 0.909079 0.002802 0.002802 0.085317
 0.003127 0.084992 0.908754 0.003127
 0.167772 0.826299 0.002802 0.003127
 0.085317 0.908754 0.002802 0.003127
 0.003127 0.002802 0.990944 0.003127
 0.333482 0.660589 0.002802 0.003127

MOTIF 5-GAGAAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002803 0.002512 0.918196 0.076489
 0.992173 0.002512 0.002512 0.002803
 0.002803 0.002512 0.918196 0.076489
 0.623031 0.224282 0.076198 0.076489
 0.992173 0.002512 0.002512 0.002803
 0.844801 0.076198 0.002512 0.076489
 0.770878 0.076198 0.150121 0.002803
 0.002803 0.076198 0.002512 0.918487

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-90.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-90/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.39 seconds
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