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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.305 C 0.195 G 0.195 T 0.305 

MOTIF 1-GAAGGTCR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.2e-001
 0.060746 0.176383 0.760311 0.002560
 0.702107 0.001637 0.001637 0.294619
 0.994166 0.001637 0.001637 0.002560
 0.002560 0.059823 0.935056 0.002560
 0.002560 0.001637 0.993242 0.002560
 0.235868 0.001637 0.001637 0.760858
 0.002560 0.935056 0.059823 0.002560
 0.411554 0.001637 0.584248 0.002560

MOTIF 2-AAGTWGGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.2e-001
 0.990150 0.002764 0.002764 0.004322
 0.990150 0.002764 0.002764 0.004322
 0.004322 0.002764 0.988592 0.004322
 0.004322 0.002764 0.002764 0.990150
 0.498669 0.002764 0.002764 0.495804
 0.102556 0.002764 0.890358 0.004322
 0.004322 0.002764 0.988592 0.004322
 0.201105 0.002764 0.100997 0.695135

MOTIF 3-ACATGGAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.865063 0.003450 0.003450 0.128037
 0.005396 0.985757 0.003450 0.005396
 0.987703 0.003450 0.003450 0.005396
 0.128037 0.126090 0.003450 0.742423
 0.005396 0.003450 0.985757 0.005396
 0.005396 0.126090 0.863117 0.005396
 0.987703 0.003450 0.003450 0.005396
 0.374503 0.003450 0.616651 0.005396

MOTIF 4-ATGAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.990524 0.002659 0.002659 0.004159
 0.004159 0.002659 0.002659 0.990524
 0.098669 0.002659 0.800003 0.098669
 0.951399 0.002659 0.041783 0.004159
 0.004159 0.002659 0.894513 0.098669
 0.896013 0.002659 0.002659 0.098669
 0.004159 0.002659 0.799699 0.193484
 0.990524 0.002659 0.002659 0.004159

MOTIF 5-AAAACTGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.925761 0.069372 0.001898 0.002969
 0.993235 0.001898 0.001898 0.002969
 0.993235 0.001898 0.001898 0.002969
 0.925761 0.001898 0.001898 0.070442
 0.002969 0.857217 0.069372 0.070442
 0.138133 0.001898 0.035635 0.824334
 0.070442 0.001898 0.779368 0.148292
 0.070442 0.001898 0.924690 0.002969

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-85.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-85/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	0.96 seconds
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