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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-YCTTATCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 108 P= 5.7e-002
 0.090380 0.260491 0.129526 0.519603
 0.074001 0.624516 0.267434 0.034048
 0.040322 0.000371 0.013603 0.945704
 0.032525 0.000371 0.000371 0.966733
 0.919239 0.000371 0.079806 0.000583
 0.000583 0.000371 0.000371 0.998674
 0.000583 0.985230 0.013603 0.000583
 0.826572 0.000371 0.132734 0.040322

MOTIF 2-AAATGATT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.994494 0.001541 0.001541 0.002423
 0.994494 0.001541 0.001541 0.002423
 0.994494 0.001541 0.001541 0.002423
 0.002423 0.001541 0.001541 0.994494
 0.278989 0.001541 0.717047 0.002423
 0.884403 0.001541 0.111633 0.002423
 0.057380 0.111633 0.111633 0.719355
 0.057380 0.056499 0.056499 0.829623

MOTIF 3-AGTAATGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.936873 0.017673 0.017673 0.027782
 0.027782 0.017673 0.926764 0.027782
 0.027782 0.017673 0.017673 0.936873
 0.936873 0.017673 0.017673 0.027782
 0.936873 0.017673 0.017673 0.027782
 0.027782 0.017673 0.017673 0.936873
 0.027782 0.017673 0.926764 0.027782
 0.936873 0.017673 0.017673 0.027782

MOTIF 4-YCAAACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003348 0.610055 0.078059 0.308538
 0.003348 0.839072 0.002130 0.155451
 0.992393 0.002130 0.002130 0.003348
 0.916464 0.078059 0.002130 0.003348
 0.916464 0.002130 0.002130 0.079277
 0.003348 0.915246 0.078059 0.003348
 0.992393 0.002130 0.002130 0.003348
 0.916464 0.078059 0.002130 0.003348

MOTIF 5-ATTKTTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.994348 0.001582 0.001582 0.002487
 0.229250 0.001582 0.001582 0.767585
 0.171739 0.001582 0.058000 0.768679
 0.115322 0.001582 0.540830 0.342266
 0.002487 0.201414 0.001582 0.794517
 0.002487 0.001582 0.001582 0.994348
 0.058905 0.001582 0.937026 0.002487
 0.002487 0.993443 0.001582 0.002487

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-80.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-80/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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