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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-AGACGCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.2e-001
 0.944827 0.003205 0.003205 0.048763
 0.004507 0.003205 0.987781 0.004507
 0.882175 0.003205 0.110113 0.004507
 0.004507 0.987781 0.003205 0.004507
 0.004507 0.003205 0.987781 0.004507
 0.218668 0.773621 0.003205 0.004507
 0.989083 0.003205 0.003205 0.004507
 0.004507 0.003205 0.987781 0.004507

MOTIF 2-CAGAGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003007 0.991848 0.002138 0.003007
 0.707164 0.073469 0.145029 0.074338
 0.003007 0.002138 0.991848 0.003007
 0.933659 0.031667 0.002138 0.032535
 0.003007 0.073469 0.920517 0.003007
 0.921386 0.002138 0.002138 0.074338
 0.778034 0.002138 0.002138 0.217689
 0.992716 0.002138 0.002138 0.003007

MOTIF 3-AATGACGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 7.6e-001
 0.935655 0.018891 0.018891 0.026564
 0.935655 0.018891 0.018891 0.026564
 0.026564 0.018891 0.018891 0.935655
 0.026564 0.018891 0.927982 0.026564
 0.935655 0.018891 0.018891 0.026564
 0.026564 0.927982 0.018891 0.026564
 0.026564 0.018891 0.927982 0.026564
 0.026564 0.018891 0.018891 0.935655

MOTIF 4-ACTTTGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.778005 0.002143 0.073631 0.146220
 0.218170 0.776673 0.002143 0.003014
 0.003014 0.002143 0.002143 0.992700
 0.074502 0.002143 0.073631 0.849724
 0.032607 0.002143 0.002143 0.963106
 0.003014 0.073631 0.890748 0.032607
 0.992700 0.002143 0.002143 0.003014
 0.074502 0.002143 0.777135 0.146220

MOTIF 5-GGAAAATC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.074553 0.002145 0.920286 0.003016
 0.003016 0.002145 0.920286 0.074553
 0.748237 0.246602 0.002145 0.003016
 0.992695 0.002145 0.002145 0.003016
 0.992695 0.002145 0.002145 0.003016
 0.891543 0.002145 0.031759 0.074553
 0.074553 0.073682 0.002145 0.849620
 0.104168 0.604291 0.145450 0.146091

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-76.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-76/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	0.92 seconds
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