********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.293 C 0.207 G 0.207 T 0.293 

MOTIF 1-AACMKGTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 9.7e-001
 0.878233 0.001570 0.065220 0.054977
 0.889218 0.001570 0.027902 0.081309
 0.054892 0.862313 0.054235 0.028560
 0.561994 0.423306 0.012471 0.002228
 0.002228 0.012471 0.423306 0.561994
 0.028560 0.054235 0.862313 0.054892
 0.081309 0.027902 0.001570 0.889218
 0.054977 0.065220 0.001570 0.878233

MOTIF 2-CAAAATAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.168079 0.825994 0.002450 0.003477
 0.991622 0.002450 0.002450 0.003477
 0.909454 0.002450 0.084619 0.003477
 0.991622 0.002450 0.002450 0.003477
 0.909454 0.002450 0.084619 0.003477
 0.003477 0.002450 0.002450 0.991622
 0.909454 0.084619 0.002450 0.003477
 0.333745 0.084619 0.578160 0.003477

MOTIF 3-CCCTCTTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.045761 0.948559 0.002348 0.003332
 0.082077 0.912242 0.002348 0.003332
 0.003332 0.754499 0.160092 0.082077
 0.082077 0.002348 0.002348 0.913226
 0.003332 0.753990 0.002348 0.240329
 0.003332 0.002348 0.081093 0.913226
 0.003332 0.002348 0.002348 0.991972
 0.003332 0.160092 0.002348 0.834228

MOTIF 4-ATGGRATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.991186 0.002578 0.002578 0.003658
 0.003658 0.002578 0.002578 0.991186
 0.125890 0.175470 0.694982 0.003658
 0.003658 0.175470 0.817214 0.003658
 0.558956 0.089024 0.348362 0.003658
 0.904740 0.002578 0.089024 0.003658
 0.003658 0.002578 0.002578 0.991186
 0.003658 0.002578 0.990106 0.003658

MOTIF 5-ATTCCAGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.935755 0.018791 0.018791 0.026664
 0.026664 0.018791 0.018791 0.935755
 0.026664 0.018791 0.018791 0.935755
 0.026664 0.927882 0.018791 0.026664
 0.026664 0.927882 0.018791 0.026664
 0.935755 0.018791 0.018791 0.026664
 0.026664 0.018791 0.927882 0.026664
 0.026664 0.018791 0.018791 0.935755

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-43.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-43/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n10.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.29 seconds
********************************************************************************