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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-CAACGGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 8.3e-001
 0.003465 0.990069 0.003000 0.003465
 0.811278 0.092628 0.092628 0.003465
 0.990535 0.003000 0.003000 0.003465
 0.183011 0.810524 0.003000 0.003465
 0.003465 0.092628 0.900441 0.003465
 0.093094 0.003000 0.900441 0.003465
 0.900906 0.003000 0.092628 0.003465
 0.900906 0.003000 0.092628 0.003465

MOTIF 2-GGTTCGAK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.002215 0.001917 0.993653 0.002215
 0.002215 0.001917 0.993653 0.002215
 0.002215 0.012875 0.001917 0.982993
 0.002215 0.001917 0.001917 0.993950
 0.002215 0.993653 0.001917 0.002215
 0.290511 0.059206 0.648069 0.002215
 0.993950 0.001917 0.001917 0.002215
 0.002215 0.001917 0.406848 0.589020

MOTIF 3-CAAGCAAW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003462 0.990078 0.002997 0.003462
 0.990543 0.002997 0.002997 0.003462
 0.900992 0.002997 0.092548 0.003462
 0.003462 0.002997 0.810689 0.182852
 0.003462 0.990078 0.002997 0.003462
 0.900992 0.092548 0.002997 0.003462
 0.811442 0.092548 0.002997 0.093013
 0.363401 0.002997 0.002997 0.630605

MOTIF 4-GAGTACAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.003341 0.002892 0.990427 0.003341
 0.904478 0.002892 0.002892 0.089739
 0.003341 0.002892 0.990427 0.003341
 0.176414 0.038658 0.002892 0.782036
 0.817802 0.002892 0.002892 0.176414
 0.003341 0.990427 0.002892 0.003341
 0.904478 0.002892 0.002892 0.089739
 0.089739 0.817631 0.002892 0.089739

MOTIF 5-CTGAGCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002890 0.991719 0.002501 0.002890
 0.002890 0.002501 0.002501 0.992107
 0.077626 0.152215 0.767270 0.002890
 0.917371 0.077238 0.002501 0.002890
 0.002890 0.002501 0.916983 0.077626
 0.002890 0.991719 0.002501 0.002890
 0.002890 0.751554 0.002501 0.243055
 0.917371 0.077238 0.002501 0.002890

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-27.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-27/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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