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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.31 C 0.19 G 0.19 T 0.31 

MOTIF 1-ATATCATT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.918976 0.002023 0.002023 0.076978
 0.003292 0.002023 0.002023 0.992662
 0.992662 0.002023 0.002023 0.003292
 0.076978 0.075709 0.075709 0.771604
 0.033796 0.887203 0.002023 0.076978
 0.918976 0.002023 0.075709 0.003292
 0.003292 0.223793 0.002023 0.770891
 0.150901 0.075709 0.002023 0.771367

MOTIF 2-ATCAAAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.0e-001
 0.865093 0.003368 0.003368 0.128171
 0.251254 0.003368 0.003368 0.742009
 0.005482 0.862979 0.126057 0.005482
 0.987782 0.003368 0.003368 0.005482
 0.987782 0.003368 0.003368 0.005482
 0.865093 0.003368 0.126057 0.005482
 0.005482 0.003368 0.985668 0.005482
 0.005482 0.739896 0.003368 0.251254

MOTIF 3-AAAACAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 7.6e-001
 0.933975 0.026989 0.011595 0.027441
 0.870567 0.075004 0.000721 0.053708
 0.760893 0.079523 0.053256 0.106328
 0.708231 0.000721 0.158410 0.132637
 0.002350 0.964464 0.005745 0.027441
 0.786906 0.079777 0.000721 0.132595
 0.158863 0.143017 0.607229 0.090892
 0.012047 0.053340 0.802101 0.132511

MOTIF 4-AGTAKAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.754314 0.001645 0.241363 0.002678
 0.002678 0.001645 0.813211 0.182466
 0.002678 0.061575 0.061575 0.874173
 0.874173 0.001645 0.121504 0.002678
 0.002678 0.061575 0.393705 0.542042
 0.574333 0.061575 0.181626 0.182466
 0.994032 0.001645 0.001645 0.002678
 0.002678 0.061575 0.933070 0.002678

MOTIF 5-GATTGACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.003064 0.070466 0.923405 0.003064
 0.896196 0.030274 0.001883 0.071647
 0.071647 0.139049 0.070466 0.718837
 0.003064 0.139270 0.070466 0.787200
 0.071647 0.001883 0.923405 0.003064
 0.993170 0.001883 0.001883 0.003064
 0.003064 0.991988 0.001883 0.003064
 0.003064 0.854822 0.070466 0.071647

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-25.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-25/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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