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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.287 C 0.212 G 0.212 T 0.287 

MOTIF 1-ACGCAGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 6.7e-001
 0.919106 0.052942 0.000799 0.027153
 0.105451 0.736072 0.052942 0.105535
 0.032139 0.000799 0.965980 0.001081
 0.079380 0.684013 0.079014 0.157594
 0.866963 0.000799 0.079014 0.053224
 0.158099 0.063819 0.724858 0.053224
 0.866963 0.052942 0.052942 0.027153
 0.053224 0.709324 0.158072 0.079380

MOTIF 2-GAAAAGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003400 0.002513 0.990687 0.003400
 0.991574 0.002513 0.002513 0.003400
 0.991574 0.002513 0.002513 0.003400
 0.991574 0.002513 0.002513 0.003400
 0.827631 0.084484 0.084484 0.003400
 0.003400 0.002513 0.990687 0.003400
 0.663161 0.166719 0.166719 0.003400
 0.991574 0.002513 0.002513 0.003400

MOTIF 3-AAAATTAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.904721 0.002649 0.089047 0.003584
 0.904721 0.002649 0.002649 0.089982
 0.868955 0.089047 0.002649 0.039349
 0.991119 0.002649 0.002649 0.003584
 0.003584 0.002649 0.002649 0.991119
 0.176657 0.089047 0.002649 0.731647
 0.991119 0.002649 0.002649 0.003584
 0.003584 0.175723 0.817110 0.003584

MOTIF 4-AAATAGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.772577 0.170933 0.054305 0.002185
 0.984506 0.001615 0.011693 0.002185
 0.941894 0.054305 0.001615 0.002185
 0.002185 0.001615 0.001615 0.994584
 0.836515 0.054305 0.054305 0.054875
 0.023997 0.001615 0.919513 0.054875
 0.836346 0.054305 0.001615 0.107734
 0.002185 0.107164 0.835776 0.054875

MOTIF 5-ACAACGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.993051 0.002072 0.002072 0.002804
 0.206261 0.788863 0.002072 0.002804
 0.897466 0.002072 0.030057 0.070405
 0.925341 0.069782 0.002072 0.002804
 0.070405 0.721262 0.205529 0.002804
 0.070405 0.002072 0.924719 0.002804
 0.070405 0.924719 0.002072 0.002804
 0.002804 0.002072 0.992320 0.002804

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-237.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-237/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.06 seconds
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