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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-TCCAACCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.5e-002
 0.002128 0.062227 0.002202 0.933443
 0.002128 0.933517 0.062227 0.002128
 0.122178 0.602647 0.273048 0.002128
 0.993468 0.002202 0.002202 0.002128
 0.693149 0.122446 0.002202 0.182203
 0.002128 0.933517 0.062227 0.002128
 0.062153 0.813467 0.122252 0.002128
 0.062153 0.873492 0.062227 0.002128

MOTIF 2-CRYTCGRC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 5.0e-001
 0.000822 0.951135 0.047221 0.000822
 0.588282 0.000851 0.340415 0.070452
 0.000822 0.362980 0.000851 0.635348
 0.024007 0.047221 0.303717 0.625055
 0.216042 0.735916 0.047221 0.000822
 0.000822 0.000851 0.997506 0.000822
 0.400428 0.000851 0.597899 0.000822
 0.000822 0.997506 0.000851 0.000822

MOTIF 3-TTTGCAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.020195 0.116343 0.209070 0.654391
 0.141274 0.133454 0.001384 0.723888
 0.001337 0.001384 0.001384 0.995896
 0.076771 0.001384 0.764734 0.157112
 0.157112 0.764734 0.001384 0.076771
 0.995896 0.001384 0.001384 0.001337
 0.723888 0.001384 0.133454 0.141274
 0.654391 0.209070 0.116343 0.020195

MOTIF 4-ACTGCAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.990255 0.003285 0.003285 0.003174
 0.003174 0.900815 0.003285 0.092725
 0.003174 0.003285 0.182675 0.810865
 0.003174 0.003285 0.990366 0.003174
 0.003174 0.990366 0.003285 0.003174
 0.900704 0.003285 0.092836 0.003174
 0.631185 0.272804 0.092836 0.003174
 0.990255 0.003285 0.003285 0.003174

MOTIF 5-CGGCGACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003876 0.988235 0.004012 0.003876
 0.113235 0.004012 0.878877 0.003876
 0.003876 0.004012 0.988235 0.003876
 0.003876 0.878877 0.113370 0.003876
 0.113235 0.113370 0.769519 0.003876
 0.988099 0.004012 0.004012 0.003876
 0.003876 0.878877 0.004012 0.113235
 0.660025 0.113370 0.113370 0.113235

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-232.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-232/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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