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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.295 C 0.205 G 0.205 T 0.295 

MOTIF 1-AGTGATAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.2e-001
 0.862649 0.001310 0.001310 0.134731
 0.001884 0.001310 0.906357 0.090449
 0.179084 0.001310 0.001310 0.818295
 0.001884 0.134157 0.862075 0.001884
 0.995495 0.001310 0.001310 0.001884
 0.001884 0.045593 0.001310 0.951213
 0.666760 0.001310 0.001310 0.330620
 0.356784 0.108206 0.533126 0.001884

MOTIF 2-GGATATGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.061912 0.061143 0.774535 0.102410
 0.061912 0.001757 0.933804 0.002527
 0.815802 0.001757 0.120528 0.061912
 0.061912 0.061143 0.001757 0.875188
 0.993959 0.001757 0.001757 0.002527
 0.002527 0.001757 0.061143 0.934573
 0.181258 0.061143 0.695687 0.061912
 0.875188 0.061143 0.061143 0.002527

MOTIF 3-CCTTTTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003499 0.990568 0.002434 0.003499
 0.003499 0.990568 0.002434 0.003499
 0.085744 0.249965 0.002434 0.661857
 0.085744 0.002434 0.002434 0.909388
 0.085744 0.084811 0.002434 0.827011
 0.003499 0.002434 0.002434 0.991634
 0.003499 0.908323 0.084679 0.003499
 0.085744 0.167189 0.002434 0.744634

MOTIF 4-GACAAGCW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.004185 0.002910 0.692692 0.300213
 0.989994 0.002910 0.002910 0.004185
 0.004185 0.791686 0.002910 0.201219
 0.989994 0.002910 0.002910 0.004185
 0.989994 0.002910 0.002910 0.004185
 0.004185 0.002910 0.988720 0.004185
 0.004185 0.988720 0.002910 0.004185
 0.595607 0.101269 0.002910 0.300213

MOTIF 5-CGGAGAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.193642 0.570731 0.041985 0.193642
 0.004027 0.002801 0.989145 0.004027
 0.098682 0.097456 0.799835 0.004027
 0.895716 0.002801 0.002801 0.098682
 0.004027 0.002801 0.989145 0.004027
 0.990371 0.002801 0.002801 0.004027
 0.895716 0.097456 0.002801 0.004027
 0.004027 0.097456 0.894490 0.004027

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-21.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-21/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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