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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.289 C 0.211 G 0.211 T 0.289 

MOTIF 1-YCACGTGR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.2e-001
 0.099538 0.333552 0.001186 0.565723
 0.009703 0.967977 0.001186 0.021134
 0.956924 0.001186 0.001186 0.040703
 0.079654 0.819622 0.001186 0.099538
 0.099538 0.001186 0.819622 0.079654
 0.040703 0.001186 0.001186 0.956924
 0.021134 0.001186 0.967977 0.009703
 0.565723 0.001186 0.333552 0.099538

MOTIF 2-AGAGACGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.760529 0.001425 0.142194 0.095851
 0.001956 0.001425 0.994663 0.001956
 0.948321 0.001425 0.048298 0.001956
 0.095851 0.001425 0.853895 0.048828
 0.948321 0.001425 0.001425 0.048828
 0.001956 0.947791 0.001425 0.048828
 0.001956 0.001425 0.994663 0.001956
 0.001956 0.994663 0.001425 0.001956

MOTIF 3-AAAAGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.0e-001
 0.803783 0.128481 0.001921 0.065814
 0.650116 0.192067 0.001921 0.155896
 0.930343 0.001921 0.001921 0.065814
 0.993521 0.001921 0.001921 0.002636
 0.002636 0.001921 0.929628 0.065814
 0.930343 0.001921 0.001921 0.065814
 0.993521 0.001921 0.001921 0.002636
 0.993521 0.001921 0.001921 0.002636

MOTIF 4-AAMTGACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.840315 0.078258 0.078258 0.003169
 0.916264 0.002310 0.078258 0.003169
 0.536278 0.382295 0.002310 0.079117
 0.003169 0.002310 0.002310 0.992212
 0.155065 0.002310 0.763508 0.079117
 0.992212 0.002310 0.002310 0.003169
 0.003169 0.991353 0.002310 0.003169
 0.003169 0.991353 0.002310 0.003169

MOTIF 5-AGAAGGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.935382 0.019164 0.019164 0.026291
 0.026291 0.019164 0.928255 0.026291
 0.935382 0.019164 0.019164 0.026291
 0.935382 0.019164 0.019164 0.026291
 0.026291 0.019164 0.928255 0.026291
 0.026291 0.019164 0.928255 0.026291
 0.935382 0.019164 0.019164 0.026291
 0.026291 0.928255 0.019164 0.026291

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-20.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-20/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.13 seconds
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