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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.295 C 0.204 G 0.204 T 0.295 

MOTIF 1-ATTTCGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 3.0e-001
 0.935955 0.018591 0.018591 0.026864
 0.026864 0.018591 0.018591 0.935955
 0.026864 0.018591 0.018591 0.935955
 0.026864 0.018591 0.018591 0.935955
 0.026864 0.927682 0.018591 0.026864
 0.026864 0.018591 0.927682 0.026864
 0.026864 0.927682 0.018591 0.026864
 0.935955 0.018591 0.018591 0.026864

MOTIF 2-CAGATAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 5.0e-001
 0.026864 0.927682 0.018591 0.026864
 0.935955 0.018591 0.018591 0.026864
 0.026864 0.018591 0.927682 0.026864
 0.935955 0.018591 0.018591 0.026864
 0.026864 0.018591 0.018591 0.935955
 0.935955 0.018591 0.018591 0.026864
 0.026864 0.018591 0.927682 0.026864
 0.026864 0.927682 0.018591 0.026864

MOTIF 3-ATGATGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 6.4e-001
 0.616752 0.181166 0.201229 0.000853
 0.020852 0.000590 0.000590 0.977968
 0.000853 0.000590 0.977705 0.020852
 0.917905 0.000590 0.080652 0.000853
 0.000853 0.221424 0.000590 0.777133
 0.000853 0.020589 0.977705 0.000853
 0.171285 0.586404 0.000590 0.241721
 0.997967 0.000590 0.000590 0.000853

MOTIF 4-AGCCGCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.912345 0.081915 0.002347 0.003392
 0.003392 0.035286 0.878362 0.082960
 0.003392 0.831733 0.081915 0.082960
 0.162528 0.672597 0.002347 0.162528
 0.003392 0.081915 0.911301 0.003392
 0.003392 0.990868 0.002347 0.003392
 0.003392 0.990868 0.002347 0.003392
 0.561136 0.081915 0.241051 0.115898

MOTIF 5-CACATGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001972 0.994691 0.001365 0.001972
 0.856532 0.001365 0.047620 0.094483
 0.140888 0.670456 0.094025 0.094632
 0.744798 0.140206 0.020513 0.094483
 0.001972 0.001365 0.047620 0.949043
 0.048228 0.020513 0.929287 0.001972
 0.883639 0.047620 0.047620 0.021120
 0.001972 0.855477 0.001365 0.141186

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-129.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-129/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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