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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.301 C 0.199 G 0.199 T 0.301 

MOTIF 1-CAGCAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 2.3e-001
 0.004745 0.987383 0.003127 0.004745
 0.879879 0.003127 0.112250 0.004745
 0.004745 0.003127 0.987383 0.004745
 0.004745 0.987383 0.003127 0.004745
 0.879879 0.112250 0.003127 0.004745
 0.879879 0.112250 0.003127 0.004745
 0.004745 0.003127 0.768063 0.224066
 0.770756 0.112250 0.003127 0.113868

MOTIF 2-ATAGTYTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 7.7e-001
 0.980483 0.005548 0.005548 0.008420
 0.008420 0.005548 0.005548 0.980483
 0.980483 0.005548 0.005548 0.008420
 0.008420 0.005548 0.977611 0.008420
 0.008420 0.005548 0.005548 0.980483
 0.008420 0.588404 0.005548 0.397627
 0.202070 0.005548 0.005548 0.786833
 0.980483 0.005548 0.005548 0.008420

MOTIF 3-GAGACGAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.027400 0.018055 0.927145 0.027400
 0.936491 0.018055 0.018055 0.027400
 0.027400 0.018055 0.927145 0.027400
 0.936491 0.018055 0.018055 0.027400
 0.027400 0.927145 0.018055 0.027400
 0.027400 0.018055 0.927145 0.027400
 0.936491 0.018055 0.018055 0.027400
 0.027400 0.927145 0.018055 0.027400

MOTIF 4-GGGTGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.004536 0.002989 0.944982 0.047492
 0.108857 0.002989 0.883618 0.004536
 0.108857 0.107310 0.779296 0.004536
 0.004536 0.002989 0.107310 0.885165
 0.004536 0.002989 0.987939 0.004536
 0.885165 0.002989 0.107310 0.004536
 0.004536 0.107310 0.883618 0.004536
 0.885165 0.002989 0.002989 0.108857

MOTIF 5-TACCGTAN STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.007077 0.167416 0.004663 0.820843
 0.983597 0.004663 0.004663 0.007077
 0.007077 0.981183 0.004663 0.007077
 0.007077 0.981183 0.004663 0.007077
 0.169830 0.004663 0.818430 0.007077
 0.169830 0.004663 0.004663 0.820843
 0.983597 0.004663 0.004663 0.007077
 0.169830 0.330170 0.330170 0.169830

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-12.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	0.66 seconds
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