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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.312 C 0.188 G 0.188 T 0.312 

MOTIF 1-AATTATGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 5.0e-001
 0.991108 0.002433 0.002433 0.004027
 0.991108 0.002433 0.002433 0.004027
 0.004027 0.091984 0.091984 0.812006
 0.183417 0.002433 0.002433 0.811718
 0.991108 0.002433 0.002433 0.004027
 0.273546 0.002433 0.002433 0.721589
 0.093578 0.002433 0.899962 0.004027
 0.004027 0.002433 0.002433 0.991108

MOTIF 2-AAAAGAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.837018 0.001427 0.001427 0.160128
 0.889719 0.106491 0.001427 0.002362
 0.994784 0.001427 0.001427 0.002362
 0.710376 0.128238 0.159024 0.002362
 0.002362 0.001427 0.993848 0.002362
 0.530241 0.264257 0.001427 0.204075
 0.994784 0.001427 0.001427 0.002362
 0.002362 0.001427 0.993848 0.002362

MOTIF 3-TCTTGGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.064960 0.000863 0.000863 0.933314
 0.033194 0.869114 0.032629 0.065063
 0.001428 0.128234 0.000863 0.869475
 0.128697 0.014013 0.032629 0.824661
 0.065063 0.000863 0.919496 0.014579
 0.014579 0.000863 0.951364 0.033194
 0.806148 0.000863 0.032629 0.160360
 0.901446 0.000863 0.064497 0.033194

MOTIF 4-GGAAATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.063010 0.001638 0.872341 0.063010
 0.002712 0.061937 0.932640 0.002712
 0.873415 0.061937 0.061937 0.002712
 0.994012 0.001638 0.001638 0.002712
 0.933713 0.001638 0.061937 0.002712
 0.063010 0.061937 0.001638 0.873415
 0.123698 0.026600 0.786692 0.063010
 0.933713 0.001638 0.001638 0.063010

MOTIF 5-ACACGGAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.937427 0.017118 0.017118 0.028336
 0.028336 0.926209 0.017118 0.028336
 0.937427 0.017118 0.017118 0.028336
 0.028336 0.926209 0.017118 0.028336
 0.028336 0.017118 0.926209 0.028336
 0.028336 0.017118 0.926209 0.028336
 0.937427 0.017118 0.017118 0.028336
 0.028336 0.017118 0.017118 0.937427

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-11.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-11/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.01 seconds
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