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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.313 C 0.187 G 0.187 T 0.313 

MOTIF 1-TGATAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.225784 0.057044 0.001495 0.715677
 0.002512 0.001495 0.993481 0.002512
 0.994498 0.001495 0.001495 0.002512
 0.002512 0.057044 0.001495 0.938949
 0.883221 0.001495 0.112772 0.002512
 0.994498 0.001495 0.001495 0.002512
 0.158755 0.112772 0.725962 0.002512
 0.883400 0.057044 0.057044 0.002512

MOTIF 2-CATAAACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.071716 0.826317 0.070461 0.031506
 0.924590 0.001847 0.001847 0.071716
 0.003102 0.001847 0.001847 0.993203
 0.993203 0.001847 0.001847 0.003102
 0.787142 0.070461 0.001847 0.140550
 0.924590 0.001847 0.001847 0.071716
 0.003102 0.923335 0.070461 0.003102
 0.071716 0.208352 0.001847 0.718085

MOTIF 3-ATAATAGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.881107 0.001525 0.058166 0.059202
 0.116026 0.001525 0.001525 0.880925
 0.914300 0.058166 0.001525 0.026009
 0.881107 0.001525 0.058166 0.059202
 0.116026 0.001525 0.001525 0.880925
 0.914300 0.001525 0.058166 0.026009
 0.040322 0.001525 0.841945 0.116209
 0.116026 0.058166 0.114807 0.711001

MOTIF 4-TACCGTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.068085 0.001754 0.001754 0.928408
 0.928408 0.001754 0.001754 0.068085
 0.002945 0.862077 0.001754 0.133224
 0.198994 0.783848 0.001754 0.015404
 0.068085 0.066893 0.862077 0.002945
 0.002945 0.066893 0.066893 0.863268
 0.928408 0.001754 0.066893 0.002945
 0.732780 0.132033 0.001754 0.133434

MOTIF 5-AGAGCAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.879979 0.002940 0.112144 0.004938
 0.004938 0.002940 0.987185 0.004938
 0.879979 0.002940 0.112144 0.004938
 0.114142 0.002940 0.659221 0.223697
 0.004938 0.987185 0.002940 0.004938
 0.989183 0.002940 0.002940 0.004938
 0.879979 0.112144 0.002940 0.004938
 0.004938 0.987185 0.002940 0.004938

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nhr-102.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nhr-102/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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