********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.238 C 0.262 G 0.262 T 0.238 

MOTIF 1-GGGCGGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 168 P= 4.0e-007
 0.032583 0.000242 0.966954 0.000221
 0.000221 0.000242 0.973614 0.025923
 0.000221 0.006663 0.980034 0.013082
 0.045392 0.954145 0.000242 0.000221
 0.019502 0.006663 0.973614 0.000221
 0.000221 0.000242 0.904261 0.095276
 0.849988 0.000242 0.149549 0.000221
 0.000221 0.013083 0.986475 0.000221

MOTIF 2-ACCAATCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 195 P= 8.1e-007
 0.994634 0.000183 0.000183 0.005001
 0.000166 0.997484 0.002184 0.000166
 0.000166 0.994650 0.005017 0.000166
 0.989799 0.000183 0.005017 0.005001
 0.997467 0.000183 0.000183 0.002168
 0.000166 0.005017 0.000183 0.994634
 0.024496 0.945683 0.005017 0.024803
 0.999469 0.000183 0.000183 0.000166

MOTIF 3-CRAATCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 1.7e-001
 0.000562 0.932845 0.066032 0.000562
 0.372555 0.000617 0.544301 0.082527
 0.867322 0.115159 0.000617 0.016902
 0.965523 0.000617 0.033298 0.000562
 0.007326 0.016958 0.000617 0.975099
 0.000562 0.932793 0.000617 0.066029
 0.000562 0.000617 0.998260 0.000562
 0.000562 0.965526 0.000617 0.033295

MOTIF 4-GAAGAHGY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.7e-001
 0.000955 0.001050 0.997040 0.000955
 0.941365 0.001050 0.028840 0.028745
 0.726936 0.056675 0.103372 0.113018
 0.056625 0.001050 0.913580 0.028745
 0.885515 0.001050 0.084690 0.028745
 0.280073 0.467271 0.001050 0.251606
 0.084326 0.001050 0.913670 0.000955
 0.000955 0.551091 0.028840 0.419114

MOTIF 5-ACTTTTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 3.0e-001
 0.899978 0.098431 0.000833 0.000758
 0.004035 0.936625 0.000833 0.058507
 0.066946 0.000833 0.022896 0.909324
 0.000758 0.000833 0.000833 0.997575
 0.000758 0.000833 0.044959 0.953450
 0.031954 0.201412 0.089297 0.677337
 0.031954 0.720989 0.202173 0.044884
 0.927167 0.022896 0.005053 0.044884

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/nfya-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_nfya-1/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.04 seconds
********************************************************************************