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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-ATTGAACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 3.0e-001
 0.934100 0.020445 0.020445 0.025009
 0.025009 0.020445 0.020445 0.934100
 0.025009 0.020445 0.020445 0.934100
 0.025009 0.020445 0.929536 0.025009
 0.934100 0.020445 0.020445 0.025009
 0.934100 0.020445 0.020445 0.025009
 0.025009 0.929536 0.020445 0.025009
 0.025009 0.929536 0.020445 0.025009

MOTIF 2-ACTGAGCY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.993573 0.001994 0.001994 0.002439
 0.002439 0.993128 0.001994 0.002439
 0.002439 0.001994 0.001994 0.993573
 0.063898 0.001994 0.931669 0.002439
 0.684290 0.311276 0.001994 0.002439
 0.002439 0.001994 0.993128 0.002439
 0.002439 0.993128 0.001994 0.002439
 0.002439 0.495849 0.001994 0.499717

MOTIF 3-AAGGTCGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.992826 0.002226 0.002226 0.002723
 0.992826 0.002226 0.002226 0.002723
 0.002723 0.002226 0.992329 0.002723
 0.002723 0.139644 0.786313 0.071321
 0.071321 0.070824 0.002226 0.855629
 0.002723 0.992329 0.002226 0.002723
 0.031120 0.139644 0.826514 0.002723
 0.071321 0.139644 0.717714 0.071321

MOTIF 4-CGCTCTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.025009 0.929536 0.020445 0.025009
 0.025009 0.020445 0.929536 0.025009
 0.025009 0.929536 0.020445 0.025009
 0.025009 0.020445 0.020445 0.934100
 0.025009 0.929536 0.020445 0.025009
 0.025009 0.020445 0.020445 0.934100
 0.934100 0.020445 0.020445 0.025009
 0.934100 0.020445 0.020445 0.025009

MOTIF 5-GGTTCGAR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.002854 0.002333 0.991959 0.002854
 0.002854 0.002333 0.991959 0.002854
 0.074767 0.002333 0.002333 0.920567
 0.002854 0.002333 0.002333 0.992479
 0.074767 0.848134 0.074246 0.002854
 0.002854 0.002333 0.920046 0.074767
 0.992479 0.002333 0.002333 0.002854
 0.641492 0.002333 0.353321 0.002854

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mxl-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mxl-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.07 seconds
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