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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-ATGAGACT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.990854 0.002917 0.002917 0.003311
 0.176716 0.002917 0.002917 0.817449
 0.003311 0.089263 0.904115 0.003311
 0.644758 0.089263 0.089263 0.176716
 0.003311 0.089263 0.904115 0.003311
 0.904508 0.002917 0.089263 0.003311
 0.003311 0.990460 0.002917 0.003311
 0.176716 0.089263 0.038517 0.695504

MOTIF 2-CCCKCCCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.003780 0.890531 0.101909 0.003780
 0.003780 0.890531 0.003331 0.102358
 0.003780 0.791953 0.200486 0.003780
 0.102358 0.003331 0.397642 0.496669
 0.003780 0.890531 0.101909 0.003780
 0.003780 0.791953 0.101909 0.102358
 0.003780 0.693375 0.200486 0.102358
 0.003780 0.003331 0.791953 0.200936

MOTIF 3-CYTGKCRA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.061191 0.816695 0.119854 0.002260
 0.061191 0.473443 0.060923 0.404443
 0.002260 0.026288 0.060923 0.910529
 0.203351 0.001991 0.792398 0.002260
 0.061191 0.001991 0.532375 0.404443
 0.002260 0.934558 0.001991 0.061191
 0.522306 0.060923 0.355580 0.061191
 0.674803 0.060923 0.237717 0.026557

MOTIF 4-CACGTGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.6e-001
 0.001364 0.996070 0.001202 0.001364
 0.960661 0.036773 0.001202 0.001364
 0.001364 0.965155 0.001202 0.032279
 0.129781 0.001202 0.867653 0.001364
 0.001364 0.001202 0.001202 0.996232
 0.036936 0.036773 0.924927 0.001364
 0.852908 0.001202 0.072936 0.072953
 0.996232 0.001202 0.001202 0.001364

MOTIF 5-CTATTCST STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.002917 0.991595 0.002571 0.002917
 0.002917 0.002571 0.306886 0.687626
 0.839784 0.002571 0.154728 0.002917
 0.002917 0.306886 0.002571 0.687626
 0.155075 0.078649 0.002571 0.763705
 0.078996 0.763358 0.154728 0.002917
 0.155075 0.306886 0.535122 0.002917
 0.155075 0.002571 0.078649 0.763705

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mml-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mml-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	2.15 seconds
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