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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.262 C 0.238 G 0.238 T 0.262 

MOTIF 1-AGAGGAKG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 2.4e-001
 0.674000 0.129871 0.002188 0.193941
 0.066258 0.002188 0.929137 0.002417
 0.966778 0.002188 0.002188 0.028845
 0.002417 0.135994 0.731489 0.130100
 0.002417 0.002188 0.992978 0.002417
 0.993206 0.002188 0.002188 0.002417
 0.220369 0.002188 0.322013 0.455430
 0.066258 0.002188 0.929137 0.002417

MOTIF 2-CGATTTGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.001002 0.997088 0.000908 0.001002
 0.080891 0.027386 0.664538 0.227185
 0.997182 0.000908 0.000908 0.001002
 0.027524 0.106823 0.027386 0.838267
 0.080524 0.000908 0.080344 0.838225
 0.213003 0.027386 0.064826 0.694784
 0.223879 0.000908 0.641647 0.133566
 0.027481 0.944130 0.027386 0.001002

MOTIF 3-GRAATTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.001809 0.001638 0.974969 0.021585
 0.617119 0.032618 0.339317 0.010946
 0.994916 0.001638 0.001638 0.001809
 0.994916 0.001638 0.001638 0.001809
 0.242224 0.001638 0.001638 0.754501
 0.049582 0.001638 0.021414 0.927366
 0.049582 0.001638 0.899198 0.049582
 0.994916 0.001638 0.001638 0.001809

MOTIF 4-AGTGGGGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.932945 0.021600 0.021600 0.023855
 0.023855 0.021600 0.930691 0.023855
 0.023855 0.021600 0.021600 0.932945
 0.023855 0.021600 0.930691 0.023855
 0.023855 0.021600 0.930691 0.023855
 0.023855 0.021600 0.930691 0.023855
 0.023855 0.021600 0.930691 0.023855
 0.023855 0.021600 0.930691 0.023855

MOTIF 5-AATTTCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.701760 0.220434 0.002488 0.075318
 0.992277 0.002488 0.002488 0.002747
 0.002747 0.032530 0.002488 0.962236
 0.147889 0.002488 0.002488 0.847136
 0.178792 0.002488 0.002488 0.816233
 0.002747 0.992018 0.002488 0.002747
 0.002747 0.992018 0.002488 0.002747
 0.002747 0.002488 0.992018 0.002747

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mls-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mls-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.16 seconds
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