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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.239 C 0.261 G 0.261 T 0.239 

MOTIF 1-CTCGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 82 P= 8.5e-002
 0.021764 0.932782 0.023691 0.021764
 0.021764 0.023691 0.023691 0.930855
 0.021764 0.932782 0.023691 0.021764
 0.021764 0.023691 0.932782 0.021764
 0.021764 0.023691 0.932782 0.021764
 0.021764 0.932782 0.023691 0.021764
 0.021764 0.932782 0.023691 0.021764
 0.930855 0.023691 0.023691 0.021764

MOTIF 2-CAAACACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.2e-001
 0.001896 0.939257 0.002064 0.056783
 0.993977 0.002064 0.002064 0.001896
 0.939089 0.002064 0.002064 0.056783
 0.884202 0.111839 0.002064 0.001896
 0.001896 0.994145 0.002064 0.001896
 0.939089 0.002064 0.002064 0.056783
 0.001896 0.774418 0.056951 0.166735
 0.111848 0.829305 0.002064 0.056783

MOTIF 3-AAGCGYGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.991287 0.002985 0.002985 0.002742
 0.991287 0.002985 0.002985 0.002742
 0.161806 0.002985 0.753063 0.082146
 0.002742 0.912126 0.082389 0.002742
 0.002742 0.002985 0.991530 0.002742
 0.002742 0.402576 0.002985 0.591696
 0.082146 0.161793 0.753318 0.002742
 0.002742 0.912126 0.002985 0.082146

MOTIF 4-MTTGCAAK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.572562 0.299574 0.001865 0.125999
 0.150568 0.001865 0.001865 0.845701
 0.076141 0.250116 0.001865 0.671878
 0.001714 0.001865 0.920280 0.076141
 0.076141 0.920280 0.001865 0.001714
 0.671878 0.001865 0.250116 0.076141
 0.845701 0.001865 0.001865 0.150568
 0.125999 0.001865 0.299574 0.572562

MOTIF 5-ACGCAGAS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.991030 0.003073 0.003073 0.002823
 0.084697 0.909407 0.003073 0.002823
 0.002823 0.003073 0.991280 0.002823
 0.002823 0.991280 0.003073 0.002823
 0.991030 0.003073 0.003073 0.002823
 0.002823 0.003073 0.991280 0.002823
 0.991030 0.003073 0.003073 0.002823
 0.002823 0.580853 0.413501 0.002823

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mes-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mes-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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