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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.226 G 0.226 T 0.275 

MOTIF 1-AAAAGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.2e-001
 0.991409 0.002670 0.002670 0.003251
 0.909327 0.002670 0.002670 0.085332
 0.991409 0.002670 0.002670 0.003251
 0.744370 0.249709 0.002670 0.003251
 0.003251 0.002670 0.990828 0.003251
 0.909327 0.084752 0.002670 0.003251
 0.003251 0.002670 0.743790 0.250289
 0.991409 0.002670 0.002670 0.003251

MOTIF 2-CCAGCAGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.001075 0.888371 0.055181 0.055373
 0.109758 0.768450 0.028032 0.093760
 0.834265 0.000883 0.028032 0.136819
 0.082609 0.055181 0.833986 0.028224
 0.191774 0.643374 0.082330 0.082522
 0.800549 0.039271 0.066420 0.093760
 0.055373 0.137022 0.752232 0.055373
 0.012314 0.039271 0.136890 0.811525

MOTIF 3-AATAAAAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.767043 0.001846 0.115355 0.115756
 0.823797 0.001846 0.172109 0.002248
 0.002248 0.001846 0.001846 0.994060
 0.994060 0.001846 0.001846 0.002248
 0.856691 0.139215 0.001846 0.002248
 0.799937 0.001846 0.001846 0.196371
 0.766677 0.001846 0.229229 0.002248
 0.002248 0.001846 0.001846 0.994060

MOTIF 4-CACGTGGT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002701 0.992380 0.002219 0.002701
 0.924667 0.002219 0.070414 0.002701
 0.002701 0.787575 0.002219 0.207505
 0.030931 0.138828 0.827540 0.002701
 0.030931 0.002219 0.070414 0.896436
 0.207505 0.002219 0.719380 0.070896
 0.117401 0.002219 0.877680 0.002701
 0.070896 0.002219 0.070414 0.856472

MOTIF 5-GCAGACAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002918 0.002397 0.991767 0.002918
 0.076604 0.844395 0.002397 0.076604
 0.918602 0.076083 0.002397 0.002918
 0.224688 0.002397 0.696310 0.076604
 0.918602 0.076083 0.002397 0.002918
 0.002918 0.991767 0.002397 0.002918
 0.844679 0.002397 0.150006 0.002918
 0.033422 0.813891 0.076083 0.076604

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mel-28.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mel-28/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.11 seconds
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