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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.285 C 0.215 G 0.215 T 0.285 

MOTIF 1-CCACGTGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 3.5e-001
 0.203984 0.437474 0.188307 0.170235
 0.011492 0.985839 0.001148 0.001521
 0.884976 0.001148 0.001148 0.112727
 0.020026 0.977305 0.001148 0.001521
 0.001521 0.001148 0.977305 0.020026
 0.112727 0.001148 0.001148 0.884976
 0.001521 0.001148 0.985839 0.011492
 0.170235 0.188307 0.437474 0.203984

MOTIF 2-AACTGATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.927405 0.002042 0.002042 0.068511
 0.861599 0.067848 0.067848 0.002705
 0.002705 0.992548 0.002042 0.002705
 0.002705 0.067848 0.067848 0.861599
 0.002705 0.002042 0.992548 0.002705
 0.927405 0.002042 0.067848 0.002705
 0.002705 0.002042 0.002042 0.993211
 0.795581 0.133866 0.002042 0.068511

MOTIF 3-AAATAATW STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.990614 0.002823 0.002823 0.003739
 0.770701 0.185074 0.040486 0.003739
 0.990614 0.002823 0.002823 0.003739
 0.003739 0.002823 0.002823 0.990614
 0.990614 0.002823 0.002823 0.003739
 0.861972 0.093802 0.002823 0.041402
 0.003739 0.002823 0.002823 0.990614
 0.534545 0.185074 0.002823 0.277557

MOTIF 4-GCWGCWGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.007017 0.047976 0.937991 0.007017
 0.007017 0.895312 0.005298 0.092373
 0.494702 0.005298 0.005298 0.494702
 0.092373 0.005298 0.895312 0.007017
 0.007017 0.895312 0.005298 0.092373
 0.494702 0.005298 0.005298 0.494702
 0.092373 0.005298 0.895312 0.007017
 0.007017 0.937991 0.047976 0.007017

MOTIF 5-ATGTGTTC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.679318 0.001945 0.190596 0.128141
 0.002576 0.001945 0.001945 0.993533
 0.002576 0.001945 0.992902 0.002576
 0.128141 0.001945 0.001945 0.867969
 0.002576 0.064627 0.804656 0.128141
 0.028524 0.064627 0.027893 0.878956
 0.002576 0.127510 0.001945 0.867969
 0.028524 0.966954 0.001945 0.002576

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mdl-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mdl-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	0.91 seconds
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