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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.342 C 0.159 G 0.159 T 0.342 

MOTIF 1-AATAATTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.904682 0.001991 0.089038 0.004289
 0.991730 0.001991 0.001991 0.004289
 0.004289 0.177146 0.001991 0.816575
 0.904682 0.001991 0.001991 0.091337
 0.817104 0.001991 0.089038 0.091867
 0.047813 0.001991 0.001991 0.948206
 0.027526 0.089038 0.089038 0.794398
 0.815497 0.001991 0.001991 0.180522

MOTIF 2-AATCCACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.912786 0.001821 0.001821 0.083572
 0.673842 0.081469 0.001821 0.242868
 0.003924 0.081469 0.001821 0.912786
 0.083572 0.831035 0.001821 0.083572
 0.083572 0.910683 0.001821 0.003924
 0.753490 0.001821 0.001821 0.242868
 0.116307 0.877947 0.001821 0.003924
 0.673842 0.320413 0.001821 0.003924

MOTIF 3-AGTTTSAY STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 7 P= 1.0e+000
 0.984538 0.003722 0.003722 0.008019
 0.008019 0.003722 0.980241 0.008019
 0.170772 0.166475 0.003722 0.659032
 0.008019 0.003722 0.003722 0.984538
 0.170772 0.003722 0.003722 0.821785
 0.008019 0.654735 0.329228 0.008019
 0.984538 0.003722 0.003722 0.008019
 0.008019 0.654735 0.003722 0.333525

MOTIF 4-AAAAGGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.940136 0.014409 0.014409 0.031045
 0.940136 0.014409 0.014409 0.031045
 0.940136 0.014409 0.014409 0.031045
 0.940136 0.014409 0.014409 0.031045
 0.031045 0.014409 0.923500 0.031045
 0.031045 0.014409 0.923500 0.031045
 0.031045 0.014409 0.014409 0.940136
 0.940136 0.014409 0.014409 0.031045

MOTIF 5-TACTAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.031045 0.014409 0.014409 0.940136
 0.940136 0.014409 0.014409 0.031045
 0.031045 0.923500 0.014409 0.031045
 0.031045 0.014409 0.014409 0.940136
 0.940136 0.014409 0.014409 0.031045
 0.940136 0.014409 0.014409 0.031045
 0.940136 0.014409 0.014409 0.031045
 0.940136 0.014409 0.014409 0.031045

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/mbf-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_mbf-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.49 seconds
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