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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.24 C 0.26 G 0.26 T 0.24 

MOTIF 1-GCCGCACG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.002037 0.061050 0.934877 0.002037
 0.002037 0.934877 0.061050 0.002037
 0.002037 0.875846 0.120081 0.002037
 0.060878 0.061050 0.876036 0.002037
 0.119909 0.875846 0.002208 0.002037
 0.969189 0.026567 0.002208 0.002037
 0.002037 0.876036 0.061050 0.060878
 0.120099 0.061050 0.792456 0.026395

MOTIF 2-ACACTACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.0e-001
 0.930900 0.023645 0.023645 0.021809
 0.021809 0.932736 0.023645 0.021809
 0.930900 0.023645 0.023645 0.021809
 0.021809 0.932736 0.023645 0.021809
 0.021809 0.023645 0.023645 0.930900
 0.930900 0.023645 0.023645 0.021809
 0.021809 0.932736 0.023645 0.021809
 0.021809 0.023645 0.932736 0.021809

MOTIF 3-ATGGGAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.930900 0.023645 0.023645 0.021809
 0.021809 0.023645 0.023645 0.930900
 0.021809 0.023645 0.932736 0.021809
 0.021809 0.023645 0.932736 0.021809
 0.021809 0.023645 0.932736 0.021809
 0.930900 0.023645 0.023645 0.021809
 0.021809 0.023645 0.932736 0.021809
 0.930900 0.023645 0.023645 0.021809

MOTIF 4-CGCAAACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.001874 0.940080 0.002032 0.056014
 0.056014 0.002032 0.885940 0.056014
 0.110155 0.885940 0.002032 0.001874
 0.754565 0.164977 0.024444 0.056014
 0.762608 0.118638 0.062739 0.056014
 0.939922 0.056172 0.002032 0.001874
 0.024286 0.917668 0.002032 0.056014
 0.994063 0.002032 0.002032 0.001874

MOTIF 5-AAGAGGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.994802 0.001779 0.001779 0.001641
 0.690601 0.144144 0.001779 0.163477
 0.001641 0.049183 0.947536 0.001641
 0.852589 0.096587 0.001779 0.049045
 0.116073 0.191548 0.595931 0.096449
 0.005994 0.001779 0.875593 0.116635
 0.049045 0.001779 0.852575 0.096601
 0.899841 0.096740 0.001779 0.001641

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/madf-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_madf-2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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