********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-TATCAATT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.7e-001
 0.014886 0.052350 0.014722 0.918042
 0.952012 0.003211 0.000847 0.043930
 0.155604 0.063010 0.000847 0.780539
 0.104100 0.790953 0.026598 0.078349
 0.806374 0.129605 0.011507 0.052514
 0.636483 0.181274 0.103895 0.078349
 0.026763 0.078143 0.078185 0.816910
 0.052556 0.026598 0.129812 0.791034

MOTIF 2-ACGTCGTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.987116 0.004034 0.004034 0.004816
 0.004816 0.986334 0.004034 0.004816
 0.250589 0.004034 0.740561 0.004816
 0.127505 0.004034 0.004034 0.864427
 0.004816 0.740561 0.249806 0.004816
 0.004816 0.126723 0.863645 0.004816
 0.004816 0.004034 0.004034 0.987116
 0.004816 0.004034 0.863645 0.127505

MOTIF 3-CGCCGCAS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.003019 0.991434 0.002528 0.003019
 0.003019 0.002528 0.959602 0.034851
 0.003019 0.959602 0.002528 0.034851
 0.003019 0.991434 0.002528 0.003019
 0.079915 0.002528 0.914538 0.003019
 0.003019 0.991434 0.002528 0.003019
 0.760988 0.079425 0.002528 0.157059
 0.003019 0.605461 0.311605 0.079915

MOTIF 4-ABTGAACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.987126 0.004031 0.004031 0.004812
 0.004812 0.249608 0.249214 0.496365
 0.004812 0.249214 0.004031 0.741943
 0.004812 0.004031 0.986344 0.004812
 0.987126 0.004031 0.004031 0.004812
 0.987126 0.004031 0.004031 0.004812
 0.004812 0.986344 0.004031 0.004812
 0.004812 0.986344 0.004031 0.004812

MOTIF 5-AAAAGAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.933827 0.020718 0.020718 0.024736
 0.933827 0.020718 0.020718 0.024736
 0.933827 0.020718 0.020718 0.024736
 0.933827 0.020718 0.020718 0.024736
 0.024736 0.020718 0.929809 0.024736
 0.933827 0.020718 0.020718 0.024736
 0.933827 0.020718 0.020718 0.024736
 0.024736 0.020718 0.929809 0.024736

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/madf-10.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_madf-10/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n07.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.03 seconds
********************************************************************************