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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-GTTCAATT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 9.5e-002
 0.001052 0.056286 0.927775 0.014887
 0.056393 0.000945 0.040070 0.902592
 0.056393 0.000945 0.028615 0.914047
 0.056482 0.913851 0.000945 0.028722
 0.774797 0.056286 0.167866 0.001052
 0.858705 0.056286 0.000945 0.084064
 0.084332 0.111717 0.056286 0.747665
 0.111735 0.067741 0.028615 0.791909

MOTIF 2-ACTGAGCY STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.840183 0.002586 0.154352 0.002879
 0.002879 0.991656 0.002586 0.002879
 0.002879 0.002586 0.078347 0.916188
 0.002879 0.078347 0.915895 0.002879
 0.991949 0.002586 0.002586 0.002879
 0.002879 0.002586 0.915895 0.078640
 0.002879 0.991656 0.002586 0.002879
 0.002879 0.533401 0.002586 0.461134

MOTIF 3-GTGGTTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.023945 0.021509 0.930600 0.023945
 0.023945 0.021509 0.021509 0.933036
 0.023945 0.021509 0.930600 0.023945
 0.023945 0.021509 0.930600 0.023945
 0.023945 0.021509 0.021509 0.933036
 0.023945 0.021509 0.021509 0.933036
 0.933036 0.021509 0.021509 0.023945
 0.933036 0.021509 0.021509 0.023945

MOTIF 4-ACGCTCTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.743899 0.002806 0.250172 0.003123
 0.003123 0.826567 0.002806 0.167505
 0.003123 0.084996 0.908757 0.003123
 0.003123 0.908757 0.084996 0.003123
 0.003123 0.002806 0.002806 0.991266
 0.085314 0.908757 0.002806 0.003123
 0.003123 0.084996 0.002806 0.909075
 0.743899 0.002806 0.250172 0.003123

MOTIF 5-AGCATGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.845432 0.144489 0.004769 0.005309
 0.005309 0.004769 0.984612 0.005309
 0.145030 0.844892 0.004769 0.005309
 0.985152 0.004769 0.004769 0.005309
 0.005309 0.004769 0.004769 0.985152
 0.005309 0.004769 0.984612 0.005309
 0.005309 0.004769 0.984612 0.005309
 0.705262 0.004769 0.284659 0.005309

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lsy-27.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lsy-27/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.08 seconds
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