********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.268 C 0.232 G 0.232 T 0.268 

MOTIF 1-TACGGTAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 1.2e-001
 0.000596 0.034332 0.000516 0.964556
 0.998373 0.000516 0.000516 0.000596
 0.000596 0.998293 0.000516 0.000596
 0.146294 0.064010 0.678914 0.110782
 0.031465 0.000516 0.967423 0.000596
 0.000596 0.000516 0.000516 0.998373
 0.952094 0.046795 0.000516 0.000596
 0.295642 0.000516 0.556943 0.146899

MOTIF 2-CGCAAACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 5.0e-001
 0.001057 0.750159 0.000915 0.247868
 0.001057 0.000915 0.996970 0.001057
 0.001057 0.996970 0.000915 0.001057
 0.997112 0.000915 0.000915 0.001057
 0.887204 0.000915 0.000915 0.110965
 0.997112 0.000915 0.000915 0.001057
 0.001057 0.996970 0.000915 0.001057
 0.997112 0.000915 0.000915 0.001057

MOTIF 3-TGTCGTMA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.002143 0.001856 0.001856 0.994145
 0.113021 0.001856 0.882980 0.002143
 0.168638 0.001856 0.001856 0.827651
 0.002143 0.993857 0.001856 0.002143
 0.002143 0.001856 0.993857 0.002143
 0.002143 0.001856 0.001856 0.994145
 0.494482 0.335203 0.057294 0.113021
 0.827829 0.001856 0.112733 0.057582

MOTIF 4-CCGTGACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002935 0.991589 0.002541 0.002935
 0.002935 0.991589 0.002541 0.002935
 0.078846 0.078452 0.839767 0.002935
 0.002935 0.154607 0.002541 0.839917
 0.002935 0.154607 0.687456 0.155001
 0.991983 0.002541 0.002541 0.002935
 0.002935 0.991589 0.002541 0.002935
 0.002935 0.002541 0.915678 0.078846

MOTIF 5-AAACAAGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.745896 0.125856 0.063964 0.064285
 0.684004 0.063964 0.187748 0.064285
 0.807788 0.002072 0.125856 0.064285
 0.002393 0.931250 0.063964 0.002393
 0.931572 0.002072 0.063964 0.002393
 0.993464 0.002072 0.002072 0.002393
 0.126376 0.002072 0.869159 0.002393
 0.064285 0.002072 0.002072 0.931572

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lsy-2.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lsy-2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n06.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.04 seconds
********************************************************************************