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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-ACGAAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.991304 0.002610 0.002610 0.003476
 0.003476 0.990437 0.002610 0.003476
 0.003476 0.002610 0.906064 0.087850
 0.991304 0.002610 0.002610 0.003476
 0.595999 0.171629 0.144522 0.087850
 0.991304 0.002610 0.002610 0.003476
 0.991304 0.002610 0.002610 0.003476
 0.822285 0.002610 0.171629 0.003476

MOTIF 2-CAACACAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 2.4e-001
 0.025964 0.928582 0.019491 0.025964
 0.935055 0.019491 0.019491 0.025964
 0.935055 0.019491 0.019491 0.025964
 0.025964 0.928582 0.019491 0.025964
 0.935055 0.019491 0.019491 0.025964
 0.025964 0.928582 0.019491 0.025964
 0.935055 0.019491 0.019491 0.025964
 0.025964 0.019491 0.928582 0.025964

MOTIF 3-AGAAATTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 8.8e-001
 0.792375 0.082710 0.041918 0.082997
 0.001675 0.164689 0.791299 0.042336
 0.833035 0.001258 0.082710 0.082997
 0.711053 0.123240 0.001258 0.164449
 0.955148 0.001258 0.041918 0.001675
 0.001675 0.123371 0.041918 0.833035
 0.082997 0.001258 0.001258 0.914488
 0.059168 0.001258 0.897238 0.042336

MOTIF 4-AAGGTCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.989842 0.003049 0.003049 0.004061
 0.792717 0.003049 0.101611 0.102623
 0.102782 0.003049 0.791546 0.102623
 0.102623 0.003049 0.890267 0.004061
 0.004061 0.003049 0.003049 0.989842
 0.004061 0.890267 0.101611 0.004061
 0.989842 0.003049 0.003049 0.004061
 0.102623 0.693143 0.101611 0.102623

MOTIF 5-GTYYRRAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.001947 0.001462 0.781635 0.214957
 0.001947 0.001462 0.119589 0.877003
 0.001947 0.474199 0.001462 0.522392
 0.049198 0.521983 0.048712 0.380107
 0.380107 0.048712 0.521983 0.049198
 0.522392 0.001462 0.474199 0.001947
 0.877003 0.119589 0.001462 0.001947
 0.214957 0.781635 0.001462 0.001947

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lsy-12.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lsy-12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	0.91 seconds
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