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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.295 C 0.205 G 0.205 T 0.295 

MOTIF 1-AAATAKYR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.942814 0.001537 0.001537 0.054113
 0.817350 0.178906 0.001537 0.002208
 0.838837 0.001537 0.001537 0.158090
 0.002208 0.001537 0.001537 0.994719
 0.994719 0.001537 0.001537 0.002208
 0.002208 0.001537 0.348697 0.647558
 0.002208 0.646887 0.001537 0.349368
 0.595653 0.001537 0.400603 0.002208

MOTIF 2-CATGTGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.0e-001
 0.003075 0.991711 0.002140 0.003075
 0.920352 0.002140 0.002140 0.075367
 0.075367 0.146958 0.074433 0.703242
 0.003075 0.074433 0.919418 0.003075
 0.075367 0.002140 0.002140 0.920352
 0.003075 0.002140 0.991711 0.003075
 0.775534 0.002140 0.146958 0.075367
 0.075367 0.074433 0.002140 0.848060

MOTIF 3-CGTGTACT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 8.8e-001
 0.026800 0.927745 0.018655 0.026800
 0.026800 0.018655 0.927745 0.026800
 0.026800 0.018655 0.018655 0.935891
 0.026800 0.018655 0.927745 0.026800
 0.026800 0.018655 0.018655 0.935891
 0.935891 0.018655 0.018655 0.026800
 0.026800 0.927745 0.018655 0.026800
 0.026800 0.018655 0.018655 0.935891

MOTIF 4-ATCAATTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.837749 0.001544 0.158490 0.002218
 0.159164 0.053691 0.053691 0.733454
 0.159164 0.732613 0.001544 0.106680
 0.838253 0.053691 0.053691 0.054365
 0.994695 0.001544 0.001544 0.002218
 0.002218 0.001544 0.001544 0.994695
 0.054365 0.053691 0.001544 0.890400
 0.002218 0.001544 0.001544 0.994695

MOTIF 5-AAATGMGY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.875920 0.001184 0.001184 0.121711
 0.995930 0.001184 0.001184 0.001701
 0.995930 0.001184 0.001184 0.001701
 0.121840 0.001184 0.001184 0.875792
 0.001701 0.001184 0.995413 0.001701
 0.282240 0.458038 0.177886 0.081837
 0.001701 0.097751 0.698573 0.201975
 0.081708 0.578305 0.017744 0.322243

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lir-3.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lir-3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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