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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.281 C 0.218 G 0.218 T 0.281 

MOTIF 1-GCGCTCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.2e-001
 0.025591 0.019864 0.928955 0.025591
 0.025591 0.928955 0.019864 0.025591
 0.025591 0.019864 0.928955 0.025591
 0.025591 0.928955 0.019864 0.025591
 0.025591 0.019864 0.019864 0.934682
 0.025591 0.928955 0.019864 0.025591
 0.025591 0.928955 0.019864 0.025591
 0.934682 0.019864 0.019864 0.025591

MOTIF 2-TCCCGCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.3e-001
 0.038729 0.001173 0.001173 0.958925
 0.076066 0.884032 0.038391 0.001511
 0.001511 0.876206 0.001173 0.121110
 0.038729 0.958586 0.001173 0.001511
 0.076066 0.038391 0.809477 0.076066
 0.038729 0.943180 0.016580 0.001511
 0.001511 0.958586 0.001173 0.038729
 0.846551 0.001173 0.150765 0.001511

MOTIF 3-AAAGGCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.908289 0.088567 0.001374 0.001771
 0.995481 0.001374 0.001374 0.001771
 0.821096 0.088567 0.088567 0.001771
 0.001771 0.001374 0.995085 0.001771
 0.045367 0.001374 0.864296 0.088963
 0.263488 0.689771 0.044970 0.001771
 0.045367 0.001374 0.951488 0.001771
 0.001771 0.977037 0.019422 0.001771

MOTIF 4-CGACGCGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 8.8e-001
 0.003123 0.991331 0.002424 0.003123
 0.003123 0.002424 0.991331 0.003123
 0.992030 0.002424 0.002424 0.003123
 0.080013 0.837551 0.002424 0.080013
 0.189644 0.002424 0.804809 0.003123
 0.080013 0.914441 0.002424 0.003123
 0.234536 0.002424 0.759917 0.003123
 0.838250 0.002424 0.079314 0.080013

MOTIF 5-CTACCGTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.088330 0.908558 0.001360 0.001752
 0.044902 0.087798 0.001360 0.865940
 0.995527 0.001360 0.001360 0.001752
 0.001752 0.995135 0.001360 0.001752
 0.256213 0.610948 0.087938 0.044902
 0.001752 0.001360 0.995135 0.001752
 0.001752 0.001360 0.001360 0.995527
 0.995527 0.001360 0.001360 0.001752

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lin-54.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lin-54/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	0.95 seconds
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