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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.297 C 0.203 G 0.203 T 0.297 

MOTIF 1-AAATCTTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 5.0e-001
 0.931887 0.065774 0.000949 0.001389
 0.996713 0.000949 0.000949 0.001389
 0.704684 0.033362 0.098187 0.163767
 0.066215 0.087878 0.000949 0.844958
 0.098732 0.736552 0.163326 0.001389
 0.131041 0.000949 0.217738 0.650273
 0.163558 0.033362 0.000949 0.802132
 0.066215 0.000949 0.931447 0.001389

MOTIF 2-AGAAATTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.993545 0.001863 0.001863 0.002728
 0.101071 0.001863 0.894337 0.002728
 0.993545 0.001863 0.001863 0.002728
 0.866034 0.001863 0.001863 0.130239
 0.929892 0.001863 0.001863 0.066381
 0.066484 0.001863 0.129374 0.802279
 0.194303 0.065516 0.129374 0.610807
 0.929892 0.065516 0.001863 0.002728

MOTIF 3-ACAAAACG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.814714 0.001747 0.121300 0.062239
 0.121338 0.862941 0.013162 0.002558
 0.934267 0.001747 0.001747 0.062239
 0.814906 0.061428 0.061428 0.062239
 0.993948 0.001747 0.001747 0.002558
 0.874587 0.121108 0.001747 0.002558
 0.122111 0.848878 0.026453 0.002558
 0.062239 0.001747 0.933456 0.002558

MOTIF 4-ATGGTASW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.922571 0.001496 0.073743 0.002190
 0.053286 0.001496 0.001496 0.943723
 0.104546 0.052591 0.738481 0.104381
 0.155807 0.001496 0.738316 0.104381
 0.002190 0.001496 0.001496 0.994819
 0.994819 0.001496 0.001496 0.002190
 0.002190 0.482509 0.359659 0.155642
 0.483532 0.103687 0.001496 0.411285

MOTIF 5-GAAGAACY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004686 0.003200 0.987429 0.004686
 0.660955 0.003200 0.112520 0.223325
 0.770275 0.003200 0.003200 0.223325
 0.004686 0.003200 0.987429 0.004686
 0.988914 0.003200 0.003200 0.004686
 0.879595 0.003200 0.112520 0.004686
 0.004686 0.987429 0.003200 0.004686
 0.004686 0.659470 0.003200 0.332645

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lin-40.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lin-40/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	0.99 seconds
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