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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-AGAAGAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.992726 0.002059 0.002059 0.003156
 0.003156 0.074352 0.919336 0.003156
 0.631030 0.002059 0.146644 0.220267
 0.703555 0.146644 0.146644 0.003156
 0.003156 0.002059 0.991629 0.003156
 0.848141 0.074352 0.074352 0.003156
 0.847908 0.146877 0.002059 0.003156
 0.003156 0.002059 0.991629 0.003156

MOTIF 2-ATGTTGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.991720 0.002344 0.002344 0.003593
 0.085893 0.002344 0.002344 0.909420
 0.003593 0.084644 0.908171 0.003593
 0.168192 0.002344 0.002344 0.827120
 0.003593 0.084644 0.002344 0.909420
 0.003593 0.002344 0.990470 0.003593
 0.662520 0.002344 0.249243 0.085893
 0.250757 0.002344 0.002344 0.744555

MOTIF 3-AGAAAACK STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.889373 0.001500 0.106828 0.002299
 0.002299 0.001500 0.708612 0.287590
 0.762244 0.233957 0.001500 0.002299
 0.994701 0.001500 0.001500 0.002299
 0.814908 0.181293 0.001500 0.002299
 0.762075 0.159661 0.001500 0.076764
 0.002299 0.993902 0.001500 0.002299
 0.002299 0.001500 0.624745 0.371456

MOTIF 4-AGAAAAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.687496 0.025044 0.058215 0.229246
 0.002471 0.001612 0.993446 0.002471
 0.937702 0.058215 0.001612 0.002471
 0.914271 0.001612 0.025044 0.059074
 0.937702 0.058215 0.001612 0.002471
 0.881100 0.001612 0.058215 0.059074
 0.002471 0.228387 0.766671 0.002471
 0.097674 0.784856 0.001612 0.115858

MOTIF 5-TTTGAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003198 0.002086 0.002086 0.992629
 0.003198 0.002086 0.002086 0.992629
 0.003198 0.002086 0.002086 0.992629
 0.003198 0.002086 0.991517 0.003198
 0.845864 0.002086 0.002086 0.149963
 0.962299 0.002086 0.002086 0.033528
 0.698150 0.002086 0.002086 0.297677
 0.992629 0.002086 0.002086 0.003198

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lin-35.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lin-35/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n07.farnam.hpc.yale.internal
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FINALTIME:	1.42 seconds
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