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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.257 C 0.243 G 0.243 T 0.257 

MOTIF 1-CATCTGTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 94 P= 2.6e-001
 0.000866 0.997453 0.000816 0.000866
 0.984942 0.000816 0.013377 0.000866
 0.000866 0.165594 0.074933 0.758607
 0.000866 0.941103 0.047515 0.010516
 0.000866 0.000816 0.024128 0.974190
 0.000866 0.026956 0.924613 0.047565
 0.000866 0.114598 0.047666 0.836870
 0.000866 0.743354 0.057367 0.198413

MOTIF 2-ATTTTTGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 9.5e-001
 0.826583 0.085180 0.002880 0.085356
 0.003056 0.002880 0.002880 0.991183
 0.003056 0.002880 0.167745 0.826319
 0.003056 0.002880 0.085180 0.908883
 0.085356 0.002880 0.085180 0.826583
 0.003056 0.002880 0.085180 0.908883
 0.003056 0.002880 0.991007 0.003056
 0.085356 0.002880 0.085180 0.826583

MOTIF 3-TTCGAAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.057130 0.112097 0.001928 0.828845
 0.112215 0.001928 0.112097 0.773760
 0.112392 0.718204 0.057012 0.112392
 0.002046 0.001928 0.938896 0.057130
 0.828845 0.001928 0.057012 0.112215
 0.883929 0.112097 0.001928 0.002046
 0.883752 0.001928 0.112274 0.002046
 0.002046 0.773643 0.167182 0.057130

MOTIF 4-ATGAATAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.744284 0.085180 0.085180 0.085356
 0.003056 0.002880 0.002880 0.991183
 0.003056 0.002880 0.991007 0.003056
 0.908883 0.085180 0.002880 0.003056
 0.908883 0.002880 0.085180 0.003056
 0.167920 0.085180 0.002880 0.744019
 0.991183 0.002880 0.002880 0.003056
 0.085356 0.085180 0.002880 0.826583

MOTIF 5-AGGCGGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.932491 0.022055 0.022055 0.023400
 0.023400 0.022055 0.931145 0.023400
 0.023400 0.022055 0.931145 0.023400
 0.023400 0.931145 0.022055 0.023400
 0.023400 0.022055 0.931145 0.023400
 0.023400 0.022055 0.931145 0.023400
 0.932491 0.022055 0.022055 0.023400
 0.023400 0.022055 0.931145 0.023400

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lin-32.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lin-32/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.05 seconds
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