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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.278 C 0.222 G 0.222 T 0.278 

MOTIF 1-CTGCGTCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 2.4e-001
 0.002953 0.991735 0.002359 0.002953
 0.002953 0.075998 0.002359 0.918690
 0.002953 0.297389 0.623065 0.076593
 0.002953 0.918096 0.075998 0.002953
 0.002953 0.002359 0.696705 0.297984
 0.002953 0.002359 0.002359 0.992330
 0.002953 0.918096 0.075998 0.002953
 0.076593 0.002359 0.002359 0.918690

MOTIF 2-AAAGTACG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.812132 0.042913 0.042913 0.102042
 0.811730 0.001332 0.018545 0.168393
 0.995669 0.001332 0.001332 0.001668
 0.168797 0.060126 0.769410 0.001668
 0.001668 0.042913 0.042913 0.912507
 0.870926 0.042913 0.042913 0.043248
 0.018881 0.978120 0.001332 0.001668
 0.001668 0.042913 0.953752 0.001668

MOTIF 3-AAACACCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.994427 0.001713 0.001713 0.002146
 0.833759 0.108883 0.001713 0.055645
 0.994427 0.001713 0.001713 0.002146
 0.002146 0.993995 0.001713 0.002146
 0.972281 0.001713 0.023860 0.002146
 0.109316 0.779655 0.001713 0.109316
 0.002146 0.993995 0.001713 0.002146
 0.109488 0.001713 0.886652 0.002146

MOTIF 4-KTACTGTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.002101 0.001677 0.414427 0.581795
 0.054475 0.001677 0.054052 0.889796
 0.994545 0.001677 0.001677 0.002101
 0.054475 0.889373 0.001677 0.054475
 0.002101 0.054052 0.054052 0.889796
 0.002101 0.001677 0.994121 0.002101
 0.002101 0.001677 0.001677 0.994545
 0.942170 0.054052 0.001677 0.002101

MOTIF 5-CTGGAAAW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.001884 0.994727 0.001505 0.001884
 0.001884 0.174466 0.189558 0.634092
 0.001884 0.001505 0.994727 0.001884
 0.001884 0.209410 0.786822 0.001884
 0.995107 0.001505 0.001505 0.001884
 0.948131 0.001505 0.001505 0.048860
 0.948131 0.001505 0.001505 0.048860
 0.478224 0.189407 0.001505 0.330864

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lin-13.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lin-13/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.06 seconds
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