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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-AGCTCAGT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.991874 0.002663 0.002663 0.002799
 0.002799 0.002663 0.991739 0.002799
 0.002799 0.763834 0.230568 0.002799
 0.002799 0.078387 0.154355 0.764458
 0.002799 0.991739 0.002663 0.002799
 0.991874 0.002663 0.002663 0.002799
 0.002799 0.002663 0.991739 0.002799
 0.002799 0.002663 0.306292 0.688246

MOTIF 2-AACCACTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 3.0e-001
 0.862011 0.002303 0.002303 0.133382
 0.862011 0.002303 0.133265 0.002420
 0.002420 0.992856 0.002303 0.002420
 0.002420 0.992856 0.002303 0.002420
 0.992973 0.002303 0.002303 0.002420
 0.002420 0.992856 0.002303 0.002420
 0.002420 0.002303 0.002303 0.992973
 0.730416 0.264861 0.002303 0.002420

MOTIF 3-GCTCTGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.023291 0.022164 0.931255 0.023291
 0.023291 0.931255 0.022164 0.023291
 0.023291 0.022164 0.022164 0.932382
 0.023291 0.931255 0.022164 0.023291
 0.023291 0.022164 0.022164 0.932382
 0.023291 0.022164 0.931255 0.023291
 0.023291 0.931255 0.022164 0.023291
 0.023291 0.931255 0.022164 0.023291

MOTIF 4-GGTTCGAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.183257 0.020291 0.794782 0.001670
 0.001670 0.001589 0.995071 0.001670
 0.001670 0.001589 0.001589 0.995152
 0.001670 0.001589 0.001589 0.995152
 0.001670 0.995071 0.001589 0.001670
 0.092171 0.001589 0.904570 0.001670
 0.995152 0.001589 0.001589 0.001670
 0.020372 0.046767 0.274855 0.658006

MOTIF 5-YTTGCAAR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.105718 0.408585 0.105374 0.380323
 0.139781 0.002412 0.002412 0.855395
 0.002534 0.002412 0.002412 0.992642
 0.002534 0.002412 0.992519 0.002534
 0.002534 0.992519 0.002412 0.002534
 0.992642 0.002412 0.002412 0.002534
 0.855395 0.002412 0.002412 0.139781
 0.380323 0.105374 0.408585 0.105718

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lin-11.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lin-11/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n05.farnam.hpc.yale.internal
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FINALTIME:	0.92 seconds
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