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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-CTMGGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.5e-002
 0.001849 0.994577 0.001726 0.001849
 0.001849 0.001726 0.001726 0.994700
 0.602791 0.344085 0.051275 0.001849
 0.001849 0.001726 0.994577 0.001849
 0.001849 0.001726 0.994577 0.001849
 0.200768 0.696558 0.001726 0.100948
 0.022361 0.974065 0.001726 0.001849
 0.762551 0.001726 0.184325 0.051398

MOTIF 2-AAGYGCGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.2e-001
 0.992460 0.002455 0.002455 0.002630
 0.921969 0.002455 0.002455 0.073121
 0.002630 0.214154 0.780586 0.002630
 0.002630 0.356275 0.002455 0.638640
 0.002630 0.002455 0.921795 0.073121
 0.002630 0.921795 0.002455 0.073121
 0.002630 0.002455 0.992285 0.002630
 0.002630 0.992285 0.002455 0.002630

MOTIF 3-GAKACGCY STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.001677 0.001566 0.995080 0.001677
 0.905282 0.001566 0.091475 0.001677
 0.136976 0.001566 0.542911 0.318548
 0.995192 0.001566 0.001566 0.001677
 0.091731 0.905026 0.001566 0.001677
 0.091731 0.001566 0.905026 0.001677
 0.001677 0.995080 0.001566 0.001677
 0.227906 0.496935 0.001566 0.273593

MOTIF 4-AAWATWTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.958748 0.036349 0.002367 0.002536
 0.770152 0.002367 0.138461 0.089021
 0.463651 0.036349 0.002367 0.497633
 0.924765 0.002367 0.070332 0.002536
 0.002536 0.070332 0.002367 0.924765
 0.497633 0.002367 0.036349 0.463651
 0.089021 0.138461 0.002367 0.770152
 0.002536 0.002367 0.036349 0.958748

MOTIF 5-CGGGAGGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.087665 0.906239 0.002943 0.003153
 0.003153 0.002943 0.990751 0.003153
 0.003153 0.002943 0.821455 0.172449
 0.003153 0.087455 0.906239 0.003153
 0.821937 0.087455 0.087455 0.003153
 0.087665 0.002943 0.906239 0.003153
 0.172449 0.002943 0.679311 0.145297
 0.003153 0.002943 0.002943 0.990960

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/lim-6.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_lim-6/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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