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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.291 C 0.209 G 0.209 T 0.291 

MOTIF 1-TCTTATCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 2.1e-001
 0.041262 0.097263 0.080400 0.781076
 0.018054 0.660611 0.200487 0.120848
 0.001660 0.001196 0.040798 0.956345
 0.001660 0.001196 0.001196 0.995947
 0.948771 0.040798 0.001196 0.009235
 0.001660 0.159603 0.001196 0.837541
 0.001660 0.955881 0.001196 0.041262
 0.837541 0.001196 0.080400 0.080863

MOTIF 2-TAAAAATT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 7.6e-001
 0.003759 0.002709 0.002709 0.990823
 0.901155 0.002709 0.002709 0.093427
 0.901011 0.002709 0.092521 0.003759
 0.990823 0.002709 0.002709 0.003759
 0.811200 0.002709 0.002709 0.183383
 0.901155 0.002709 0.092376 0.003759
 0.003759 0.092376 0.092376 0.811488
 0.093427 0.092376 0.002709 0.811488

MOTIF 3-CGCTTTTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.049616 0.851709 0.049058 0.049616
 0.145548 0.001439 0.640363 0.212650
 0.097236 0.851709 0.049058 0.001996
 0.001996 0.001439 0.049058 0.947506
 0.001996 0.001439 0.021152 0.975413
 0.001996 0.144298 0.068772 0.784934
 0.192476 0.001439 0.001439 0.804647
 0.001996 0.946949 0.001439 0.049616

MOTIF 4-CAACACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.002237 0.940546 0.001612 0.055605
 0.965783 0.001612 0.030367 0.002237
 0.941171 0.001612 0.054980 0.002237
 0.002237 0.993913 0.001612 0.002237
 0.726667 0.001612 0.054980 0.216741
 0.002237 0.887178 0.054980 0.055605
 0.725973 0.001612 0.270177 0.002237
 0.834265 0.054980 0.001612 0.109144

MOTIF 5-GACGTGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.026418 0.019036 0.928127 0.026418
 0.935509 0.019036 0.019036 0.026418
 0.026418 0.928127 0.019036 0.026418
 0.026418 0.019036 0.928127 0.026418
 0.026418 0.019036 0.019036 0.935509
 0.026418 0.019036 0.928127 0.026418
 0.026418 0.019036 0.928127 0.026418
 0.026418 0.928127 0.019036 0.026418

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/let-607.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_let-607/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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