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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.29 C 0.21 G 0.21 T 0.29 

MOTIF 1-TGATAAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.0e-001
 0.002343 0.001695 0.001695 0.994267
 0.058315 0.001695 0.937647 0.002343
 0.882142 0.113820 0.001695 0.002343
 0.002343 0.001695 0.001695 0.994267
 0.971097 0.001695 0.001695 0.025513
 0.994267 0.001695 0.001695 0.002343
 0.576812 0.283371 0.137475 0.002343
 0.746846 0.024866 0.113820 0.114468

MOTIF 2-AGACGCMG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 8.8e-001
 0.991578 0.002490 0.002490 0.003442
 0.003442 0.002490 0.990627 0.003442
 0.909347 0.002490 0.002490 0.085673
 0.085673 0.908395 0.002490 0.003442
 0.085673 0.002490 0.743668 0.168169
 0.003442 0.990627 0.002490 0.003442
 0.546116 0.447952 0.002490 0.003442
 0.003442 0.002490 0.990627 0.003442

MOTIF 3-ATAATGAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.921124 0.073715 0.002167 0.002994
 0.146322 0.002167 0.002167 0.849345
 0.862499 0.002167 0.132340 0.002994
 0.921124 0.073715 0.002167 0.002994
 0.002994 0.002167 0.002167 0.992672
 0.146553 0.002167 0.848286 0.002994
 0.921124 0.002167 0.002167 0.074543
 0.074543 0.073715 0.145494 0.706248

MOTIF 4-AAGAKAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.985703 0.004227 0.004227 0.005842
 0.985703 0.004227 0.004227 0.005842
 0.005842 0.004227 0.984088 0.005842
 0.846109 0.143822 0.004227 0.005842
 0.005842 0.004227 0.563955 0.425976
 0.985703 0.004227 0.004227 0.005842
 0.985703 0.004227 0.004227 0.005842
 0.005842 0.984088 0.004227 0.005842

MOTIF 5-CAGAATGW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.001600 0.957406 0.001158 0.039835
 0.728438 0.077628 0.077628 0.116306
 0.039835 0.001158 0.919171 0.039835
 0.651844 0.192457 0.115863 0.039835
 0.919614 0.039393 0.001158 0.039835
 0.001600 0.077628 0.192457 0.728315
 0.001600 0.001158 0.880936 0.116306
 0.536893 0.001158 0.192457 0.269493

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/jun-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_jun-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n04.farnam.hpc.yale.internal
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FINALTIME:	1.29 seconds
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