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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-GATTTCCG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.003324 0.230907 0.762446 0.003324
 0.916354 0.002159 0.078163 0.003324
 0.079328 0.002159 0.002159 0.916354
 0.003324 0.002159 0.002159 0.992358
 0.003324 0.002159 0.002159 0.992358
 0.079328 0.763181 0.078163 0.079328
 0.003324 0.915190 0.078163 0.003324
 0.003324 0.078163 0.839185 0.079328

MOTIF 2-CAAMAGTK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.017995 0.861093 0.001117 0.119796
 0.996047 0.001117 0.001117 0.001719
 0.996047 0.001117 0.001117 0.001719
 0.632307 0.325541 0.040433 0.001719
 0.956730 0.040433 0.001117 0.001719
 0.198809 0.001117 0.798355 0.001719
 0.159366 0.079750 0.017393 0.743491
 0.057312 0.001117 0.608155 0.333416

MOTIF 3-AAACTTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 7.7e-001
 0.936645 0.017900 0.017900 0.027555
 0.936645 0.017900 0.017900 0.027555
 0.936645 0.017900 0.017900 0.027555
 0.027555 0.926991 0.017900 0.027555
 0.027555 0.017900 0.017900 0.936645
 0.027555 0.017900 0.017900 0.936645
 0.027555 0.017900 0.926991 0.027555
 0.936645 0.017900 0.017900 0.027555

MOTIF 4-ATTGAATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.993787 0.001755 0.001755 0.002702
 0.002702 0.001755 0.001755 0.993787
 0.002702 0.249126 0.063548 0.684624
 0.002702 0.001755 0.992840 0.002702
 0.808409 0.001755 0.187134 0.002702
 0.560839 0.249126 0.063548 0.126487
 0.002702 0.001755 0.001755 0.993787
 0.993787 0.001755 0.001755 0.002702

MOTIF 5-AAAGACCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.936645 0.017900 0.017900 0.027555
 0.936645 0.017900 0.017900 0.027555
 0.936645 0.017900 0.017900 0.027555
 0.027555 0.017900 0.926991 0.027555
 0.936645 0.017900 0.017900 0.027555
 0.027555 0.926991 0.017900 0.027555
 0.027555 0.926991 0.017900 0.027555
 0.936645 0.017900 0.017900 0.027555

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/irx-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_irx-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.00 seconds
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