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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.315 C 0.185 G 0.185 T 0.315 

MOTIF 1-CGAGACGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.116451 0.822510 0.001521 0.059518
 0.116451 0.001521 0.879443 0.002586
 0.766459 0.115569 0.001521 0.116451
 0.026154 0.058454 0.912807 0.002586
 0.766459 0.001521 0.001521 0.230499
 0.116451 0.879443 0.001521 0.002586
 0.002586 0.058454 0.879443 0.059518
 0.766459 0.001521 0.058454 0.173566

MOTIF 2-ATATTCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.849564 0.049843 0.049843 0.050750
 0.197329 0.001297 0.049843 0.751531
 0.877438 0.001297 0.001297 0.119968
 0.050750 0.001297 0.001297 0.946655
 0.002205 0.001297 0.001297 0.995201
 0.050750 0.799798 0.098702 0.050750
 0.849564 0.049843 0.049843 0.050750
 0.946655 0.001297 0.001297 0.050750

MOTIF 3-CTATTTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 8.8e-001
 0.020856 0.707581 0.002354 0.269208
 0.004002 0.002354 0.002354 0.991289
 0.815053 0.090472 0.090472 0.004002
 0.004002 0.090472 0.002354 0.903171
 0.004002 0.002354 0.002354 0.991289
 0.004002 0.002354 0.002354 0.991289
 0.903171 0.002354 0.090472 0.004002
 0.180521 0.725004 0.090472 0.004002

MOTIF 4-ACAATGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.904617 0.046660 0.046660 0.002064
 0.002064 0.884808 0.111064 0.002064
 0.722836 0.092105 0.046660 0.138400
 0.904617 0.092105 0.001214 0.002064
 0.002064 0.001214 0.001214 0.995508
 0.047509 0.001214 0.721547 0.229730
 0.950062 0.001214 0.001214 0.047509
 0.684771 0.001214 0.001214 0.312801

MOTIF 5-ACAGGACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.722013 0.092103 0.002397 0.183487
 0.093780 0.899749 0.002397 0.004074
 0.991132 0.002397 0.002397 0.004074
 0.093780 0.092103 0.810042 0.004074
 0.004074 0.002397 0.899749 0.093780
 0.811720 0.002397 0.002397 0.183487
 0.183775 0.720047 0.092103 0.004074
 0.901426 0.002397 0.002397 0.093780

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hrde-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hrde-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.04 seconds
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