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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.251 C 0.249 G 0.249 T 0.251 

MOTIF 1-GCTCTRCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 6.7e-001
 0.001484 0.001470 0.995561 0.001484
 0.042446 0.954600 0.001470 0.001484
 0.001484 0.042431 0.001470 0.954614
 0.001484 0.954600 0.001470 0.042446
 0.001484 0.042431 0.083524 0.872560
 0.501914 0.001470 0.495131 0.001484
 0.001484 0.995561 0.001470 0.001484
 0.001484 0.995561 0.001470 0.001484

MOTIF 2-CACTAGRC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.0e-001
 0.002143 0.993592 0.002122 0.002143
 0.993612 0.002122 0.002122 0.002143
 0.061272 0.519418 0.180081 0.239230
 0.061272 0.002122 0.002122 0.934484
 0.934484 0.002122 0.061251 0.002143
 0.002143 0.002122 0.934463 0.061272
 0.342052 0.002122 0.653683 0.002143
 0.002143 0.993592 0.002122 0.002143

MOTIF 3-AGGATTCR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.891224 0.101695 0.003524 0.003558
 0.003558 0.003524 0.989361 0.003558
 0.003558 0.003524 0.989361 0.003558
 0.989395 0.003524 0.003524 0.003558
 0.003558 0.003524 0.003524 0.989395
 0.003558 0.003524 0.003524 0.989395
 0.003558 0.891190 0.101695 0.003558
 0.495361 0.003524 0.497557 0.003558

MOTIF 4-AACTGAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 8.3e-001
 0.931927 0.022618 0.022618 0.022836
 0.931927 0.022618 0.022618 0.022836
 0.022836 0.931709 0.022618 0.022836
 0.022836 0.022618 0.022618 0.931927
 0.022836 0.022618 0.931709 0.022836
 0.931927 0.022618 0.022618 0.022836
 0.022836 0.022618 0.931709 0.022836
 0.022836 0.931709 0.022618 0.022836

MOTIF 5-ACCCGSGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.993871 0.002036 0.002036 0.002056
 0.002056 0.937115 0.002036 0.058792
 0.058792 0.743238 0.002036 0.195934
 0.252670 0.743238 0.002036 0.002056
 0.002056 0.002036 0.993851 0.002056
 0.002056 0.343735 0.652153 0.002056
 0.058792 0.002036 0.937115 0.002056
 0.776507 0.025523 0.025523 0.172447

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hnd-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hnd-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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