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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.269 C 0.231 G 0.231 T 0.269 

MOTIF 1-AGACGSAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 5.0e-001
 0.975062 0.021475 0.001602 0.001861
 0.001861 0.001602 0.946669 0.049868
 0.946928 0.049609 0.001602 0.001861
 0.001861 0.753088 0.001602 0.243449
 0.001861 0.001602 0.994676 0.001861
 0.001861 0.328357 0.619915 0.049868
 0.927055 0.021475 0.001602 0.049868
 0.001861 0.001602 0.994676 0.001861

MOTIF 2-GCAAACAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.002923 0.002516 0.916234 0.078327
 0.002923 0.991638 0.002516 0.002923
 0.992045 0.002516 0.002516 0.002923
 0.916641 0.002516 0.077920 0.002923
 0.992045 0.002516 0.002516 0.002923
 0.002923 0.916234 0.002516 0.078327
 0.916641 0.002516 0.077920 0.002923
 0.002923 0.991638 0.002516 0.002923

MOTIF 3-AAAAGTTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 5.0e-001
 0.891195 0.101706 0.003284 0.003815
 0.989616 0.003284 0.003284 0.003815
 0.792773 0.101706 0.101706 0.003815
 0.989616 0.003284 0.003284 0.003815
 0.003815 0.003284 0.989085 0.003815
 0.003815 0.003284 0.003284 0.989616
 0.003815 0.003284 0.299501 0.693399
 0.003815 0.003284 0.200444 0.792456

MOTIF 4-AATTTATT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 9.5e-001
 0.915977 0.002536 0.002536 0.078951
 0.687229 0.002536 0.078540 0.231694
 0.002946 0.078540 0.002536 0.915977
 0.002946 0.078540 0.002536 0.915977
 0.002946 0.078540 0.002536 0.915977
 0.915977 0.002536 0.078540 0.002946
 0.002946 0.002536 0.002536 0.991981
 0.002946 0.078540 0.078540 0.839973

MOTIF 5-AAAAAGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.933518 0.021027 0.021027 0.024427
 0.933518 0.021027 0.021027 0.024427
 0.933518 0.021027 0.021027 0.024427
 0.933518 0.021027 0.021027 0.024427
 0.933518 0.021027 0.021027 0.024427
 0.024427 0.021027 0.930118 0.024427
 0.933518 0.021027 0.021027 0.024427
 0.024427 0.021027 0.930118 0.024427

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hmg-11.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hmg-11/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.14 seconds
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