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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-CCRCGYGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.002168 0.993874 0.001791 0.002168
 0.029607 0.911557 0.029230 0.029607
 0.498209 0.001791 0.470393 0.029607
 0.057134 0.828975 0.056757 0.057134
 0.057134 0.056757 0.828975 0.057134
 0.029607 0.470393 0.001791 0.498209
 0.029607 0.029230 0.911557 0.029607
 0.002168 0.001791 0.993874 0.002168

MOTIF 2-ATCGAACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 5.0e-001
 0.712836 0.155715 0.128947 0.002502
 0.002502 0.002067 0.002067 0.993364
 0.002502 0.674186 0.002067 0.321245
 0.002502 0.065405 0.929591 0.002502
 0.993364 0.002067 0.002067 0.002502
 0.993364 0.002067 0.002067 0.002502
 0.002502 0.992929 0.002067 0.002502
 0.002502 0.866049 0.002067 0.129382

MOTIF 3-ACCACTAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.909199 0.002682 0.084873 0.003247
 0.003247 0.990825 0.002682 0.003247
 0.003247 0.990825 0.002682 0.003247
 0.909199 0.002682 0.002682 0.085437
 0.003247 0.990825 0.002682 0.003247
 0.003247 0.084873 0.002682 0.909199
 0.744553 0.084873 0.002682 0.167892
 0.085437 0.084873 0.826444 0.003247

MOTIF 4-ATCTTCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.912231 0.082038 0.002593 0.003138
 0.082584 0.241697 0.002593 0.673126
 0.003138 0.991131 0.002593 0.003138
 0.003138 0.002593 0.082038 0.912231
 0.003138 0.002593 0.241697 0.752572
 0.003138 0.991131 0.002593 0.003138
 0.719684 0.035480 0.002593 0.242243
 0.003138 0.002593 0.991131 0.003138

MOTIF 5-GAAGCCTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.002909 0.076036 0.918147 0.002909
 0.918652 0.002403 0.076036 0.002909
 0.845019 0.002403 0.076036 0.076542
 0.076542 0.002403 0.622187 0.298869
 0.076542 0.887665 0.002403 0.033390
 0.002909 0.991780 0.002403 0.002909
 0.150412 0.002403 0.076036 0.771149
 0.002909 0.002403 0.991780 0.002909

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hmbx-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hmbx-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	0.98 seconds
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