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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-CCAKMTGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 1.7e-001
 0.260311 0.612839 0.125979 0.000870
 0.000870 0.986141 0.012119 0.000870
 0.952153 0.012119 0.034858 0.000870
 0.057700 0.018305 0.481592 0.442403
 0.442403 0.481592 0.018305 0.057700
 0.000870 0.034858 0.012119 0.952153
 0.000870 0.012119 0.986141 0.000870
 0.000870 0.125979 0.612839 0.260311

MOTIF 2-AGAAGGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.0e-001
 0.869409 0.001583 0.080370 0.048638
 0.048638 0.048426 0.901141 0.001796
 0.688608 0.067817 0.148095 0.095480
 0.948195 0.048426 0.001583 0.001796
 0.001796 0.025005 0.924486 0.048713
 0.070454 0.048426 0.879324 0.001796
 0.948195 0.001583 0.001583 0.048638
 0.255852 0.001583 0.740769 0.001796

MOTIF 3-GGAGCACT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 8.8e-001
 0.024155 0.021300 0.930391 0.024155
 0.024155 0.021300 0.930391 0.024155
 0.933245 0.021300 0.021300 0.024155
 0.024155 0.021300 0.930391 0.024155
 0.024155 0.930391 0.021300 0.024155
 0.933245 0.021300 0.021300 0.024155
 0.024155 0.930391 0.021300 0.024155
 0.024155 0.021300 0.021300 0.933245

MOTIF 4-AATAGTGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.900833 0.003031 0.003031 0.093105
 0.900833 0.003031 0.092698 0.003437
 0.003437 0.003031 0.003031 0.990501
 0.990501 0.003031 0.003031 0.003437
 0.093105 0.003031 0.810615 0.093249
 0.003437 0.003031 0.092698 0.900833
 0.003437 0.003031 0.900427 0.093105
 0.721210 0.092698 0.003031 0.183061

MOTIF 5-TCGGCCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.066331 0.002156 0.065939 0.865574
 0.130217 0.865182 0.002156 0.002445
 0.002445 0.002156 0.992954 0.002445
 0.066228 0.002156 0.929171 0.002445
 0.002445 0.992954 0.002156 0.002445
 0.130217 0.865182 0.002156 0.002445
 0.865265 0.002156 0.130134 0.002445
 0.034337 0.769096 0.002156 0.194412

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hlh-8.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hlh-8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.03 seconds
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