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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.315 C 0.185 G 0.185 T 0.315 

MOTIF 1-TCTTRGAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 80 P= 6.9e-002
 0.024906 0.034644 0.017523 0.922927
 0.027036 0.937600 0.034589 0.000775
 0.076160 0.110287 0.051710 0.761843
 0.035185 0.089432 0.000456 0.874927
 0.452920 0.026718 0.416858 0.103504
 0.017841 0.000456 0.939675 0.042027
 0.759219 0.119976 0.051656 0.069150
 0.947113 0.017523 0.017523 0.017841

MOTIF 2-DCASSTGH STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 120 P= 1.6e-001
 0.233209 0.103837 0.337253 0.325702
 0.000615 0.998409 0.000362 0.000615
 0.998661 0.000362 0.000362 0.000615
 0.000615 0.325053 0.616672 0.057661
 0.057661 0.616672 0.325053 0.000615
 0.000615 0.000362 0.000362 0.998661
 0.000615 0.000362 0.998409 0.000615
 0.325702 0.337253 0.103837 0.233209

MOTIF 3-CTCGAAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.002205 0.896988 0.001299 0.099508
 0.002205 0.001299 0.049873 0.946623
 0.050778 0.848257 0.098760 0.002205
 0.168504 0.001299 0.730845 0.099352
 0.926515 0.001299 0.001299 0.070886
 0.800902 0.049873 0.049873 0.099352
 0.849476 0.049873 0.049873 0.050778
 0.196969 0.653805 0.049873 0.099352

MOTIF 4-AKGAAATC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.990274 0.002631 0.002631 0.004464
 0.004464 0.002631 0.593099 0.399806
 0.004464 0.002631 0.988441 0.004464
 0.694882 0.100990 0.199665 0.004464
 0.891915 0.002631 0.002631 0.102823
 0.990274 0.002631 0.002631 0.004464
 0.004464 0.002631 0.002631 0.990274
 0.102823 0.890082 0.002631 0.004464

MOTIF 5-TADTCTGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.003787 0.002232 0.002232 0.991750
 0.908313 0.002232 0.002232 0.087224
 0.337803 0.036772 0.287083 0.338342
 0.038327 0.002232 0.085669 0.873772
 0.087224 0.906757 0.002232 0.003787
 0.003787 0.002232 0.085669 0.908313
 0.003787 0.002232 0.990194 0.003787
 0.908313 0.002232 0.085669 0.003787

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hlh-4.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hlh-4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.18 seconds
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