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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-CAGACTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 5 P= 1.0e+000
 0.009587 0.973007 0.007819 0.009587
 0.733478 0.007819 0.007819 0.250884
 0.250884 0.007819 0.731710 0.009587
 0.974775 0.007819 0.007819 0.009587
 0.009587 0.973007 0.007819 0.009587
 0.009587 0.249116 0.007819 0.733478
 0.009587 0.973007 0.007819 0.009587
 0.250884 0.731710 0.007819 0.009587

MOTIF 2-AAATGAKG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.770205 0.003538 0.112728 0.113528
 0.879395 0.003538 0.003538 0.113528
 0.988586 0.003538 0.003538 0.004338
 0.113528 0.003538 0.003538 0.879395
 0.222718 0.003538 0.769405 0.004338
 0.988586 0.003538 0.003538 0.004338
 0.004338 0.112728 0.551025 0.331908
 0.113528 0.003538 0.878595 0.004338

MOTIF 3-BCAGCTGV STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 8 P= 1.0e+000
 0.058933 0.386472 0.222687 0.331908
 0.004338 0.933190 0.003538 0.058933
 0.933991 0.003538 0.058133 0.004338
 0.222718 0.003538 0.769405 0.004338
 0.004338 0.769405 0.003538 0.222718
 0.004338 0.058133 0.003538 0.933991
 0.058933 0.003538 0.933190 0.004338
 0.331908 0.222687 0.386472 0.058933

MOTIF 4-AAAAAGTW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.989157 0.003361 0.003361 0.004121
 0.842864 0.045928 0.003361 0.107847
 0.885431 0.003361 0.003361 0.107847
 0.885431 0.107087 0.003361 0.004121
 0.781705 0.003361 0.003361 0.211573
 0.004121 0.003361 0.884671 0.107847
 0.107847 0.003361 0.003361 0.885431
 0.461592 0.003361 0.003361 0.531686

MOTIF 5-GTCAAGAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 6 P= 1.0e+000
 0.169220 0.005274 0.819040 0.006466
 0.006466 0.005274 0.005274 0.982986
 0.006466 0.981793 0.005274 0.006466
 0.820233 0.005274 0.005274 0.169220
 0.820233 0.168027 0.005274 0.006466
 0.006466 0.005274 0.981793 0.006466
 0.820233 0.005274 0.168027 0.006466
 0.006466 0.168027 0.168027 0.657480

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hlh-17.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hlh-17/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n04.farnam.hpc.yale.internal
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FINALTIME:	0.58 seconds
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