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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.283 C 0.217 G 0.217 T 0.283 

MOTIF 1-CTCTGCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 4.7e-002
 0.002798 0.827039 0.139095 0.031068
 0.002798 0.002142 0.002142 0.992919
 0.208680 0.786381 0.002142 0.002798
 0.140203 0.002142 0.139095 0.718560
 0.002798 0.208934 0.716993 0.071274
 0.071274 0.923786 0.002142 0.002798
 0.002798 0.992263 0.002142 0.002798
 0.855965 0.070618 0.002142 0.071274

MOTIF 2-AGGTTCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.749415 0.003085 0.243471 0.004030
 0.004030 0.003085 0.890229 0.102657
 0.102657 0.003085 0.890229 0.004030
 0.004030 0.003085 0.003085 0.989801
 0.004030 0.003085 0.003085 0.989801
 0.004030 0.988856 0.003085 0.004030
 0.004030 0.003085 0.988856 0.004030
 0.791895 0.200990 0.003085 0.004030

MOTIF 3-CTGAGCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 5.0e-001
 0.025745 0.928800 0.019709 0.025745
 0.025745 0.019709 0.019709 0.934836
 0.025745 0.019709 0.928800 0.025745
 0.934836 0.019709 0.019709 0.025745
 0.025745 0.019709 0.928800 0.025745
 0.025745 0.928800 0.019709 0.025745
 0.934836 0.019709 0.019709 0.025745
 0.934836 0.019709 0.019709 0.025745

MOTIF 4-AAAATAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 1.0e+000
 0.770085 0.222055 0.003408 0.004452
 0.988732 0.003408 0.003408 0.004452
 0.661121 0.003408 0.112372 0.223099
 0.879768 0.003408 0.112372 0.004452
 0.004452 0.003408 0.003408 0.988732
 0.988732 0.003408 0.003408 0.004452
 0.988732 0.003408 0.003408 0.004452
 0.004452 0.003408 0.003408 0.988732

MOTIF 5-AAAATGTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.934836 0.019709 0.019709 0.025745
 0.934836 0.019709 0.019709 0.025745
 0.934836 0.019709 0.019709 0.025745
 0.934836 0.019709 0.019709 0.025745
 0.025745 0.019709 0.019709 0.934836
 0.025745 0.019709 0.928800 0.025745
 0.025745 0.019709 0.019709 0.934836
 0.025745 0.019709 0.928800 0.025745

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hlh-12.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hlh-12/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c26n03.farnam.hpc.yale.internal
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FINALTIME:	0.76 seconds
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