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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-RCAGCTGY STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 127 P= 2.5e-002
 0.511765 0.152950 0.271130 0.064154
 0.000505 0.995726 0.000469 0.003300
 0.989011 0.000469 0.010015 0.000505
 0.180505 0.125001 0.693989 0.000505
 0.000505 0.693989 0.125001 0.180505
 0.000505 0.010015 0.000469 0.989011
 0.003300 0.000469 0.995726 0.000505
 0.064154 0.271130 0.152950 0.511765

MOTIF 2-AAAGAGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 2.4e-001
 0.900965 0.001923 0.095042 0.002071
 0.994084 0.001923 0.001923 0.002071
 0.760808 0.057286 0.001923 0.179983
 0.002071 0.001923 0.883029 0.112977
 0.938720 0.001923 0.001923 0.057435
 0.002071 0.057286 0.938571 0.002071
 0.057435 0.827844 0.057286 0.057435
 0.938720 0.057286 0.001923 0.002071

MOTIF 3-CTCCCCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 9 P= 5.0e-001
 0.145143 0.704855 0.144768 0.005234
 0.005234 0.004858 0.004858 0.985049
 0.005234 0.984674 0.004858 0.005234
 0.005234 0.984674 0.004858 0.005234
 0.005234 0.984674 0.004858 0.005234
 0.145143 0.704855 0.004858 0.145143
 0.005234 0.144768 0.004858 0.845140
 0.005234 0.984674 0.004858 0.005234

MOTIF 4-ACGAAGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.994114 0.001913 0.001913 0.002061
 0.057145 0.773628 0.112082 0.057145
 0.002061 0.001913 0.993966 0.002061
 0.718514 0.001913 0.277513 0.002061
 0.773598 0.056997 0.001913 0.167491
 0.112230 0.001913 0.608374 0.277483
 0.773776 0.001913 0.222251 0.002061
 0.002061 0.001913 0.993966 0.002061

MOTIF 5-TAGTGTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.094430 0.020763 0.001607 0.883200
 0.762782 0.001607 0.047882 0.187729
 0.048006 0.001607 0.809383 0.141004
 0.001731 0.001607 0.047882 0.948780
 0.048006 0.001607 0.809830 0.140556
 0.094281 0.047882 0.001607 0.856230
 0.902505 0.001607 0.047882 0.048006
 0.995055 0.001607 0.001607 0.001731

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hlh-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hlh-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.02 seconds
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