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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-AACAAAAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 2.4e-001
 0.992999 0.002056 0.002056 0.002889
 0.855672 0.002056 0.002056 0.140215
 0.002889 0.923613 0.002056 0.071442
 0.855672 0.002056 0.002056 0.140215
 0.855672 0.002056 0.139382 0.002889
 0.787340 0.070609 0.070609 0.071442
 0.964620 0.002056 0.002056 0.031268
 0.002889 0.992166 0.002056 0.002889

MOTIF 2-GAAATGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.002490 0.179055 0.815964 0.002490
 0.993965 0.001772 0.001772 0.002490
 0.993965 0.001772 0.001772 0.002490
 0.757588 0.060867 0.179055 0.002490
 0.026953 0.001772 0.001772 0.969502
 0.061585 0.060867 0.756870 0.120679
 0.717289 0.001772 0.179055 0.101884
 0.061585 0.001772 0.119961 0.816682

MOTIF 3-CACGTAGS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.001990 0.994603 0.001417 0.001990
 0.947948 0.048645 0.001417 0.001990
 0.001990 0.947375 0.048645 0.001990
 0.049219 0.001417 0.947375 0.001990
 0.001990 0.001417 0.001417 0.995177
 0.947948 0.001417 0.001417 0.049219
 0.238436 0.095873 0.644149 0.021541
 0.001990 0.399403 0.407551 0.191056

MOTIF 4-ATCAATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.858830 0.138690 0.001031 0.001449
 0.001449 0.104192 0.001031 0.893327
 0.139108 0.858412 0.001031 0.001449
 0.858940 0.035418 0.104192 0.001449
 0.686895 0.138579 0.001031 0.173495
 0.222227 0.001031 0.035418 0.741323
 0.138997 0.018225 0.758320 0.084458
 0.893327 0.001031 0.104192 0.001449

MOTIF 5-TATAATAS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.004604 0.112519 0.003277 0.879601
 0.879601 0.003277 0.003277 0.113846
 0.004604 0.112519 0.112519 0.770358
 0.988843 0.003277 0.003277 0.004604
 0.988843 0.003277 0.003277 0.004604
 0.004604 0.003277 0.003277 0.988843
 0.879601 0.003277 0.112519 0.004604
 0.004604 0.658732 0.332061 0.004604

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/worm/fasta/RankLinear6.0_20/hif-1.fasta --oc ../result/final_prediction/worm/inference_raw/STREME/RankLinear6.0_20_hif-1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.52 seconds
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